View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_37 (Length: 215)
Name: NF20817_high_37
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 37765934 - 37765723
Alignment:
| Q |
1 |
atggaaattgaaatctgacctgggaaccatgtctttgtgcnnnnnnngtcaaacaatgtaaaggcatgaatgagtgtttgttacttcatgcggtttagaa |
100 |
Q |
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| T |
37765934 |
atggaaattgaaatctgacctgggaaccatgtctttgtgctttttttgtcaaacaatgtaaaggcatgaatgagtgtatgttacttcatgcggtttagaa |
37765835 |
T |
|
| Q |
101 |
gattaatcggtttgaattaatggat--------taaaaagttagagatccatttaaatctagactaagaataacaaaataataatcaaataaatataatt |
192 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765834 |
gattaataggtttgaattaatggattaaagaattaaaaagttagagatccatttaaatctagactaagaataacaaaataataatcaaataaatataatt |
37765735 |
T |
|
| Q |
193 |
gtatctttagca |
204 |
Q |
| |
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|||||||||||| |
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| T |
37765734 |
gtatctttagca |
37765723 |
T |
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