View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_4 (Length: 617)
Name: NF20817_high_4
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 11 - 617
Target Start/End: Original strand, 34763773 - 34764398
Alignment:
| Q |
11 |
cataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763773 |
cataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgc |
34763872 |
T |
|
| Q |
111 |
aacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763873 |
aacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaaga |
34763972 |
T |
|
| Q |
211 |
tgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgta |
310 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763973 |
tgaagatgaccaatgaaaggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgta |
34764072 |
T |
|
| Q |
311 |
taaacagagcaatcaccaataaagcaattgcaatttccaccaacatggtgta-------------------ttgttaaggataataagaatagaaacaag |
391 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
34764073 |
taaaaagagcaatcaccaataaagcaattgcaatttccaccaacatggtgtattgtatatatttgcttaagttgttaaggatactaagaatagaaacaat |
34764172 |
T |
|
| Q |
392 |
gttcttattggttactcttaggtaggtgttgagaacaaataggtttgatgttttgccctgagagaaaaggtttccaacactccccttttataaaggtaat |
491 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34764173 |
gttattattggttactcttaggtaggtgttgagaacaaataggtttgatgttttgccctgagagaaaaggtttccaacactccccttttataaaggtaat |
34764272 |
T |
|
| Q |
492 |
aatctcttgattcagtataacattacaatctcactcgtgtttaaagggttaggtcctaatttggttatatcgtggtgaggcatacaactacaaagatgga |
591 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || |||| | | | ||| ||||||||||||||||| |
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| T |
34764273 |
aatctcttgattcagtataacattaaagtctcactcgtgtttaaagggttaggtcctaattttcttctatctttgcggggcctacaactacaaagatggc |
34764372 |
T |
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| Q |
592 |
tttaattaaaatatttttaattcttc |
617 |
Q |
| |
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|| ||| |||||||||||| |||||| |
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| T |
34764373 |
ttcaatgaaaatatttttatttcttc |
34764398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 34780339 - 34779987
Alignment:
| Q |
11 |
cataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780339 |
cataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgc |
34780240 |
T |
|
| Q |
111 |
aacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaaga |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780239 |
aacaacggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaagg |
34780140 |
T |
|
| Q |
211 |
tgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
34780139 |
tgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaaggtggcgaagagcctttgattttgcagtaggtgttggacgcaagtgta |
34780040 |
T |
|
| Q |
311 |
taaacagagcaatcaccaataaagcaattgcaatttccaccaacatggtgtat |
363 |
Q |
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|| |||||||| | ||||| || || ||||| ||||||||||||||||||| |
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| T |
34780039 |
agaagagagcaatgagcaatagagtaactgcaagttccaccaacatggtgtat |
34779987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 34755797 - 34756152
Alignment:
| Q |
11 |
cataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatgc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
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| T |
34755797 |
cataggtaagacgactaatagcagaggtttggaaccttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggggttgaggc |
34755896 |
T |
|
| Q |
111 |
aacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaaga |
210 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34755897 |
aacaatggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaagg |
34755996 |
T |
|
| Q |
211 |
tgaagatgacctatgaatggaagacgtggtttagggcttggtggatttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgta |
310 |
Q |
| |
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||||||||||| ||| |||||||||| ||||| || || || ||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
34755997 |
tgaagatgaccaatggatggaagacgaggtttgggactcggaggattgggaaggtggcgaagagcctttgattttgcagtaggtgttggacgcaagtgta |
34756096 |
T |
|
| Q |
311 |
taaacagagcaatcaccaataaagcaattgcaatttccaccaacatggtgtattgt |
366 |
Q |
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|| |||||||| | ||||| || || ||||| |||||||||||||||||||||| |
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| T |
34756097 |
agaagagagcaatgagcaatagagtaactgcaagttccaccaacatggtgtattgt |
34756152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 34779959 - 34779841
Alignment:
| Q |
363 |
ttgttaaggataataagaa-tagaaacaaggttcttattggttactcttaggtaggtgttgagaacaaataggtttgatgttttgccctgagagaaaagg |
461 |
Q |
| |
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|||||||| ||| |||||| |||||| || ||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
34779959 |
ttgttaagtatactaagaagtagaaagaaagttcttattagttactcttaggt----gttgagaacaaataggatttatgttttgccctgagagaaaagg |
34779864 |
T |
|
| Q |
462 |
tttccaacactccccttttataa |
484 |
Q |
| |
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||||| ||| | ||||||||||| |
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| T |
34779863 |
tttcccacatttcccttttataa |
34779841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 484
Target Start/End: Original strand, 34756208 - 34756278
Alignment:
| Q |
414 |
taggtgttgagaacaaataggtttgatgttttgccctgagagaaaaggtttccaacactccccttttataa |
484 |
Q |
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||||||||||||||||||||| | ||||||||| |||| ||||||||||| ||| | ||||||||||| |
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| T |
34756208 |
taggtgttgagaacaaataggatgtatgttttgctctgaagtaaaaggtttcccacatttcccttttataa |
34756278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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