View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_high_7 (Length: 524)
Name: NF20817_high_7
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 49043041 - 49042533
Alignment:
| Q |
1 |
tcggacttccctgttacatagtttgtatggggtcaggtttatgccgatactcatatcacttgatcagccgatataaatttaaacaaataaacaagataat |
100 |
Q |
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| T |
49043041 |
tcggacttccctgttacatagtttgtatggggtcaggtttatgccgatactcatatcacttgatcagccgatataaatttaaacaaataaacaagataat |
49042942 |
T |
|
| Q |
101 |
tgtcatcaaatcaaataaatactgccaacaaaatttagattattgcatttcaaccaccatgtgttttcataagatttgttgtaa-tatggcctcatatta |
199 |
Q |
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| T |
49042941 |
tgtcatcaaatcaa-taaatactgccaacaaaatttagattattgcatttcaaccaccatgtgttttcataagattagttgtaaatatggcctcatatta |
49042843 |
T |
|
| Q |
200 |
ctctgccttgtagtgatgatcacatgtttagcttcctgtaggataataatctaaactgctcaccagaagtgtgatagaattgaaacagctagcacgctaa |
299 |
Q |
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| T |
49042842 |
ctctgccttgtagtgatgatcacatgtttagcttcctgcaggataataatctaaactgctcaccagaagtgtgatagaattgaaacagctagcacgctaa |
49042743 |
T |
|
| Q |
300 |
tctgaatagcgtatatgtaatgtaagaatggtgagcaagaagtcaaaatgctaatcctgtagttgactctgacatttttacaattgttgtgaacttttca |
399 |
Q |
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| T |
49042742 |
tctgaatagcgtatatgtaatttaagaatggtgagcaagaagtcaaaatgctaatcctatagttgactctgacatttttacaattgttgtgaacttttca |
49042643 |
T |
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| Q |
400 |
aaacccacatccgtaatgtatctagcagccaagaaaaataaatatgtagtatgtttactaatttcacatgcatatatcagcccctaatttcattattggc |
499 |
Q |
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| T |
49042642 |
aaacccacatccgtaatgtatctagcagccaagaaaaataaatatgtagtatgtttactaatttcacatgcatatatcagcccctaatttcattattggc |
49042543 |
T |
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| Q |
500 |
tgtactatat |
509 |
Q |
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|||||||||| |
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| T |
49042542 |
tgtactatat |
49042533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 49047500 - 49047397
Alignment:
| Q |
13 |
gttacatagtttgtatggggtcaggtttatgccgatactcatatcacttgatcagccgatataaatttaaacaaataaacaagataattgtcatcaaatc |
112 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| | |||||| |||||| ||| |||||||| ||||||||||||||| |
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| T |
49047500 |
gttacatagtttgtatggggtcagatttatgctgatactcgtatcacttgatcaaacaatataagtttaaagaaacaaacaagagaattgtcatcaaatc |
49047401 |
T |
|
| Q |
113 |
aaat |
116 |
Q |
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|||| |
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| T |
49047400 |
aaat |
49047397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 48889604 - 48889673
Alignment:
| Q |
216 |
tgatcacatgtttagcttcctgtaggataataatctaaactgctcaccagaagtgtgatagaattgaaacagc |
288 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |
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| T |
48889604 |
tgatcacatgttcagcttcctgtaggataa---tctaaactgcttatcagaagtgtgatagaattgaaacagc |
48889673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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