View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_1 (Length: 766)
Name: NF20817_low_1
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 10 - 748
Target Start/End: Original strand, 9679284 - 9680022
Alignment:
| Q |
10 |
aagaatatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
109 |
Q |
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| T |
9679284 |
aagaaaatggaaatagcaatgttcatgaaaacctcttctaaacactttcctaaattctatccatcaatctaacaatgcaagatcaattcatcatcctatc |
9679383 |
T |
|
| Q |
110 |
tttgtttcttgttctttttggtccaatccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
209 |
Q |
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| T |
9679384 |
tttgtttcttgttctttttggtccactccaagtgatctcacaaaaccaacctttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaa |
9679483 |
T |
|
| Q |
210 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctc |
309 |
Q |
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| T |
9679484 |
gatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgcaattgggaaggtgttaaatgtgatccttcaacaaatagggtatcttctc |
9679583 |
T |
|
| Q |
310 |
ttgttcttgatggattctctctttcaggacatatcggtaaaagccttatgaaattgcagttccttcaaattctttcactttctcggaacaacttcacggg |
409 |
Q |
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| T |
9679584 |
ttgttcttgatggattctctctttcaggacatattggtaaaagccttatgagattacagttccttcaaattctttcactttctcggaacaacttcacggg |
9679683 |
T |
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| Q |
410 |
gagaataaaccatgatcttcttattacactttggaatctaaaagttgttgatttgagtgaaaacaatctcgttggaacaattccggatgaactttttaaa |
509 |
Q |
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| T |
9679684 |
gagaataaaccatgatcttcttattacactttggaatctaaaagttgttgatttgagtgaaaacaatctcgttggaacaattccggatgaactttttaaa |
9679783 |
T |
|
| Q |
510 |
caatgttggtctcttagagttttatcgttcgcgaaaaacaatctcacgggtacgattcctgactctttgagttcatgctactcgttagcaagtttgaact |
609 |
Q |
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| T |
9679784 |
caatgttggtctcttagagttttatcgttcgcgaaaaacaatctcacgggtacgattcctgactctttgagttcatgctactcgttagcaagtttgaact |
9679883 |
T |
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| Q |
610 |
tttcgtctaatcaactgaaaggtgaattacattatggaatgtggtttttgaaggaacttcaatcgcttgatctctcgaataactttcttgaaggagagat |
709 |
Q |
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| T |
9679884 |
tttcttctaatcaactgaaaggtgaattacattatggaatgtggtttctgaaggaacttcaatcgcttgatctctcgaataactttcttgaaggagagat |
9679983 |
T |
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| Q |
710 |
tccgaacggaattcaaaatctatatgatttgagagagtt |
748 |
Q |
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| T |
9679984 |
tccggaaggaattcaaaatctatatgatttgagagagtt |
9680022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 161 - 406
Target Start/End: Complemental strand, 27380394 - 27380149
Alignment:
| Q |
161 |
tttcaatgaagatatgctagggttgattgtgttcaaagcaggtctagaagatccgaaaaacaaactttcttcttggaatgaagatgattatagtccttgc |
260 |
Q |
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||||||||| ||||| |||| || |||||||| ||||| ||| || ||||||| ||| ||||||| ||| ||||||||||||||||| | |||||| |
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| T |
27380394 |
tttcaatgatgatatattaggcttaattgtgtttaaagctggtttacaagatcctaaacacaaactcatttcatggaatgaagatgattacactccttgt |
27380295 |
T |
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| Q |
261 |
aattgggaaggtgtcaaatgtgatccttcaacaaatagggtatcttctcttgttcttgatggattctctctttcaggacatatcggtaaaagccttatga |
360 |
Q |
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| T |
27380294 |
aattgggaaggtgtgaaatgtgattcttcaaacaatagagtcacttctgttatacttgatggattctctctttcaggtcacattgatagaggcttattga |
27380195 |
T |
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| Q |
361 |
aattgcagttccttcaaattctttcactttctcggaacaacttcac |
406 |
Q |
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| T |
27380194 |
gattgcagtttcttcaaactctatcactttctggtaacaatttcac |
27380149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 750
Target Start/End: Complemental strand, 27379909 - 27379808
Alignment:
| Q |
649 |
tgtggtttttgaaggaacttcaatcgcttgatctctcgaataactttcttgaaggagagattccgaacggaattcaaaatctatatgatttgagagagtt |
748 |
Q |
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|||||||||||| || | | || || |||||| | || |||||||| ||||| ||||| ||||| | || ||||||||||| |||||| |||||||||| |
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| T |
27379909 |
tgtggtttttgaggggattgcagtcacttgatgtttcaaataacttgcttgatggagaaattcctgaggggattcaaaatctttatgatatgagagagtt |
27379810 |
T |
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| Q |
749 |
ga |
750 |
Q |
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|| |
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| T |
27379809 |
ga |
27379808 |
T |
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Back To:
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