View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_12 (Length: 466)
Name: NF20817_low_12
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 56 - 456
Target Start/End: Original strand, 7099589 - 7099989
Alignment:
| Q |
56 |
ttggttagtgagatcttattagtggtaggatcaaagatttctctcttgttttctcttgggatctctaggacggttcaatggcttgatgaatgggtaaaat |
155 |
Q |
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| T |
7099589 |
ttggttagtgagatcttattagtggcgggatcaaagatttctctcttgttttctcttaggatctctacgacggttcaatggcttgatgaatgggtaaaat |
7099688 |
T |
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| Q |
156 |
tattgattgttgtttgtgaccttttggatctaatttcttgtaacctcatgtatcactcattttatagaagattgtggagttactctctccccccatacat |
255 |
Q |
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| T |
7099689 |
tattgattgttgtttgtgaccttttggatctaatttcgtgtaacctcatgtatcactcattttatagaggactgcggagttactctctccccccatacat |
7099788 |
T |
|
| Q |
256 |
aggtcatattaggttgagttgggtaaacaaccatcgatgtgttttacttcaatatttcttaggcaacaaactcaataagagtaataatatatcctcatca |
355 |
Q |
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| T |
7099789 |
aggtcatattaggttgagttgggtaaacaatcatcgatgtgttttacttcaatatttcttaggcaacaaactcaataagagtaataatatatcctcatca |
7099888 |
T |
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| Q |
356 |
tcaaaatttacttcaatatttttagatcatcaataaatttgttcaattgtgtaggttgttccactaaagattttgactctaccatcttaaatgagtaaag |
455 |
Q |
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| T |
7099889 |
tcaaaatttacttcaatatttttatatcatcaataaatttgttcaattgcgtaggttgttccactaaagattttgactctaccatcttaaatgagtaaag |
7099988 |
T |
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| Q |
456 |
t |
456 |
Q |
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| T |
7099989 |
t |
7099989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7099555 - 7099501
Alignment:
| Q |
3 |
ttatctaaagatacttaactcttagcctcgaagttttataagagttccttccttt |
57 |
Q |
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| T |
7099555 |
ttatctaaagatactcaactcttagcctcgaagttttataagagttccttccttt |
7099501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 298
Target Start/End: Complemental strand, 33079792 - 33079672
Alignment:
| Q |
179 |
ttggatctaatttcttgtaacct-catgtatcactcattttatagaagattgtggagttactctctccccccatacataggtcatattaggttgagttgg |
277 |
Q |
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| T |
33079792 |
ttggatctaatttcttgtaacctccttgtatcactaatttcatagtggattggagagctgatctctccccccagatgtaggtcatattgggtcgaactgg |
33079693 |
T |
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| Q |
278 |
gtaaacaaccatcgatgtgtt |
298 |
Q |
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| T |
33079692 |
gttaacaagcattgatgtgtt |
33079672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 163440 - 163480
Alignment:
| Q |
416 |
ccactaaagattttgactctaccatcttaaatgagtaaagt |
456 |
Q |
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| T |
163440 |
ccactatagattttgactctaccatctgaaatgaataaagt |
163480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 41163107 - 41163263
Alignment:
| Q |
64 |
tgagatcttattagtggtaggatcaaagatttctctcttgttttctcttgggatctctaggacgg-ttcaatggcttgatgaatgggt-aaaattattga |
161 |
Q |
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|||||||| ||||| || |||| ||||| ||||||||||||||||||| ||||||||| | || || | || |||||| | ||||| |||||| | |
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| T |
41163107 |
tgagatctcattagaggaaggaccaaagctttctctcttgttttctctcaggatctctatgtgggtttgagtgacttgataactgggtcgaaattagggt |
41163206 |
T |
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| Q |
162 |
ttgttgtttgtgaccttttggatctaatttcttgtaacctc-atgtatcactcattt |
217 |
Q |
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| T |
41163207 |
ttgttctttatgagcttttggatctaattttttggaacctctttgtatcactcattt |
41163263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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