View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_13 (Length: 449)
Name: NF20817_low_13
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 5461983 - 5461551
Alignment:
| Q |
18 |
aattttctccttacaataataataatttgtt---agattaaaggacataagcttaattaaaggatataagctttgccctcattactatcaactaggagga |
114 |
Q |
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| T |
5461983 |
aattttctccttacaataataataatttgttgttatattaaaggacataagcttaattaaaggatataagctttgccctcattactatcaactaggagga |
5461884 |
T |
|
| Q |
115 |
ctgccagtggggtagggcgctcaaggagggggctatctcctttctcgtgtttgaa-tttttggacacttcttaaggttaaggtgttttgttgatgtttgt |
213 |
Q |
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|||| |||||||||||| |||| |||||| ||| ||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
5461883 |
ctgctagtggggtagggtgctcgaggaggtggcgatctcctttctggtgtttgaaatttttgaacacttcttaaggttaaggtattttgttgatgtttgt |
5461784 |
T |
|
| Q |
214 |
tttaggataaggtattgactcgtctgaatctctttattaaacggagagatctcttatttttgcaatgattatgttgagtctattagtcatttgtttg--- |
310 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5461783 |
ttcaggataaggtattgactcgtctgaatctctttattaaacggagagatctcttatttttgcagtgattatgttgagtctattagtcatttgtttgtta |
5461684 |
T |
|
| Q |
311 |
tgtatttgttcagtagtttgtgtgttatatccaggtggttaggttgtgagtttgtgttaccttcggatgtaggttatgtccttaatcttgtctaagacat |
410 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5461683 |
tgtatttgttcagtagttcgtgtgttatatccaggtggttaggttgtgagtttgtgttaccttcggatgtaggttatgtccttagtcttgtctaagacat |
5461584 |
T |
|
| Q |
411 |
atgatgggaggaatgttaggtttgttcttctct |
443 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
5461583 |
atgatgggaggaatgttaggtttgttcatctct |
5461551 |
T |
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