View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_17 (Length: 390)
Name: NF20817_low_17
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 43029750 - 43030113
Alignment:
| Q |
11 |
cagagagactaactctgattcaaccaattggtaataactctgctggatcagatacaaaatcaatgatgaacataatggatgctgcatcagaagaaatgga |
110 |
Q |
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| T |
43029750 |
cagagagactaactctgattcaaccaattggtaataactctgctggatcagatacaaaatcaatgatgaacataatggatgctgcatcagaagaaatgga |
43029849 |
T |
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| Q |
111 |
agaagcattcaagttggtttatgaaaattgtccacatattcaatttggacattttgtggctaattccataatattggaagcctttgagggtgagagtttt |
210 |
Q |
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| T |
43029850 |
agaagcattcaagttggtttatgaaaattgtccacatattcaatttggacattttgtggctaattccataatattggaagcctttgagggtgagagtttt |
43029949 |
T |
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| Q |
211 |
cttcatgtggttgatcttggtatgagccttggtcttccacatggacaccaatggcgaggactaattcaaagtctcgcggatcgatccagccaccgtgttc |
310 |
Q |
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| T |
43029950 |
cttcatgtggttgatcttggcatgagccttggtcttccacatggacaccaatggcgaggactaattcaaagtctcgcggatcgatccagccaccgtgttc |
43030049 |
T |
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| Q |
311 |
ggaggcttaggatcacagcgattggtctatgcattgctagaatccaagtcattggtgaagaact |
374 |
Q |
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| T |
43030050 |
ggaggcttaggatcacagcgattggtctatgcattgctagaatccaagtcattggtgaagaact |
43030113 |
T |
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