View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20817_low_18 (Length: 367)

Name: NF20817_low_18
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20817_low_18
NF20817_low_18
[»] chr5 (12 HSPs)
chr5 (19-358)||(39475646-39475985)
chr5 (17-293)||(39483462-39483738)
chr5 (23-358)||(39451140-39451475)
chr5 (17-355)||(39486608-39486946)
chr5 (61-358)||(39472176-39472467)
chr5 (104-357)||(39454780-39455027)
chr5 (163-293)||(39470597-39470724)
chr5 (103-291)||(39458074-39458259)
chr5 (61-289)||(39460456-39460684)
chr5 (51-208)||(39464283-39464440)
chr5 (104-215)||(43312315-43312426)
chr5 (320-359)||(39460389-39460428)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 39475985 - 39475646
Alignment:
Q  19 aaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39475985 aaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaag 39475886  T
Q  119 caacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39475885 caacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtg 39475786  T
Q  219 tccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |    
T  39475785 tccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcg 39475686  T
Q  319 gtgtttggaggaagagaaacttctggaaggttgatgatgt 358  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  39475685 gtgtttgggggaagagaaacttctggaaggttgatgatgt 39475646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 39483738 - 39483462
Alignment:
Q  17 caaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaaggga 116  Q
    ||||||||||||||||| |||| ||||   |||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  39483738 caaaactcgggatggctgcctctttctcttgcagcagctgagtcaaatcgatattgtctcgttcacgaagagtgtgaagataaagattcaaaccaaggga 39483639  T
Q  117 agcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgagg 216  Q
    ||||||||   ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  39483638 agcaacactgaaagtgtagaaaacgagcgtagggacattgaactcattggcaacatcaatcatggtggtgcagaacatgtcaacaacgaaggcggagagg 39483539  T
Q  217 tgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  39483538 tgtccatgttgtccttctctagtagtgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagc 39483462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 39451475 - 39451140
Alignment:
Q  23 tcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaagcaac 122  Q
    |||||||||||| ||| |||||| || ||| |||||| ||||| || |||||||||||||| || || | ||  | ||||||||||||||||||||||||    
T  39451475 tcgggatggctaactctttctgctgctgcaactgagttgaatcaacgttgtctcgttcacggagggtatgaatatgaagattcaaaccaagggaagcaac 39451376  T
Q  123 accagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtcca 222  Q
     |||||||||||||| |||||| |||| ||    || || ||||||| ||  ||||||||||||||||||||||||||||||| || |||||||  ||||    
T  39451375 gccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcgaggactcca 39451276  T
Q  223 tgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgt 322  Q
    | || |||| ||| |||||||||||| || || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451275 ttttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgt 39451176  T
Q  323 ttggaggaagagaaacttctggaaggttgatgatgt 358  Q
    ||||||||||||||||||||||||||||||||||||    
T  39451175 ttggaggaagagaaacttctggaaggttgatgatgt 39451140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 39486946 - 39486608
Alignment:
Q  17 caaaactcgggatggctacctcgttctgcagcagcagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaaggga 116  Q
    ||||||| ||||||||||||||||||||| |||||| |||||| |||||||  ||||||||||||   ||||||| ||| |  ||  ||||||||||  |    
T  39486946 caaaacttgggatggctacctcgttctgctgcagcaactgagttgaatcgatgttgtctcgttcaaacagagtgtgaagatggagcatcaaaccaagaaa 39486847  T
Q  117 agcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgagg 216  Q
    ||||||||| ||||||||||| | ||||| |||||     || || ||||||| ||  |||||||||||||||||||||||||||||||||||||| |||    
T  39486846 agcaacaccggaagtgaagaagatgagcgcagggatggaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaaggcggcaagg 39486747  T
Q  217 tgtccatgt---tgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagcaggcatggaagcgaaacctg 313  Q
    |||||| ||   |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||   ||||    | |||| ||    
T  39486746 tgtccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatg---acaaaacgtg 39486650  T
Q  314 gattggtgtttggaggaagagaaacttctggaaggttgatga 355  Q
    | | ||||||||| |||||||||  |||||||||||||||||    
T  39486649 gttcggtgtttgggggaagagaacattctggaaggttgatga 39486608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 61 - 358
Target Start/End: Complemental strand, 39472467 - 39472176
Alignment:
Q  61 gaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaact 160  Q
    |||| |||||||||||||| ||||||||||||||| | || | |||| |||||| | |||||||| ||||||||||| || ||||||||||||  |||||    
T  39472467 gaatagacattgtctcgttgacgaagagtgtaaagatgaaaactcaatccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaact 39472368  T
Q  161 cattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttg 260  Q
    | ||||||||||  |||||| | |||||||||||||||||||| || ||||| |||  ||||| ||   ||  ||| ||| ||||||| || ||  ||||    
T  39472367 ctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaagcggcaaggactccatttt---ctgatctggtaatgaggttagatactacttg 39472271  T
Q  261 ttttacgtttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatgt 358  Q
    ||| |||||||||||||||||||||||||| |||| |||   || |  |||| |||  |||||||| | |||||||  ||||||||||||||||||||    
T  39472270 tttgacgtttggtttctgagcttcgaggagcgcagtcat---agagggaccttgatctgtgtttggggcaagagaacattctggaaggttgatgatgt 39472176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 357
Target Start/End: Complemental strand, 39455027 - 39454780
Alignment:
Q  104 tcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaac 203  Q
    ||||||||||| |||| ||||  ||||||||||| ||||| |||||||    |||||| ||||||||||  |||||||  |||||| |||||||||||||    
T  39455027 tcaaaccaaggaaagctacactggaagtgaagaagacgagtgtagggatggagaactctttggcaacatcaatcatggctgtgcaggacatgtcaacaac 39454928  T
Q  204 gaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagcaggcatggaa 303  Q
    ||| || ||||||  ||||  |||  |||| | |||| ||||||| || || |||||||| |||||||||||||||||||| ||| |||| | ||||||     
T  39454927 gaaagctgcgaggactccac-ttg--cttcaccagtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatgga- 39454832  T
Q  304 gcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatgatg 357  Q
      | || ||||||| |||||||| ||||||||   |||||||||||||||||||    
T  39454831 --ggaaactggattagtgtttgggggaagagagcattctggaaggttgatgatg 39454780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 39470597 - 39470724
Alignment:
Q  163 ttggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgtt 262  Q
    ||||||||||  |||||| | ||||||||||||||||||| ||  ||||||||| |||||||||||   |||| ||||||||||||||||| ||||||||    
T  39470597 ttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgttgt---tctccagtagtgaggttggagatagcttgtt 39470693  T
Q  263 ttacgtttggtttctgagcttcgaggagagc 293  Q
    | ||||||| ||| |||||||||||||||||    
T  39470694 tgacgtttgctttatgagcttcgaggagagc 39470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 291
Target Start/End: Original strand, 39458074 - 39458259
Alignment:
Q  103 ttcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaa 202  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||||||||   || || ||  ||||||  ||||||||||||||||||||||||||||    
T  39458074 ttcaaaccaaggaaagcaacaccggaagtgaagaagacgagcgtagggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaa 39458173  T
Q  203 cgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggaga 291  Q
     ||| || || |||  ||||| || |  | ||    |||||||||||||||| |||| ||| ||||||||||||||||||| |||||||    
T  39458174 tgaatgcagctaggactccattttctggtgct---ttagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggaga 39458259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 289
Target Start/End: Complemental strand, 39460684 - 39460456
Alignment:
Q  61 gaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaact 160  Q
    ||||| || ||||||| ||||||||||||||  |  | ||||||  ||||||||||||||||||| ||||||||||| || |||||||||||    || |    
T  39460684 gaatctacgttgtctctttcacgaagagtgtggatatgaagatttgaaccaagggaagcaacaccggaagtgaagaagacaagcgtagggactgaaaatt 39460585  T
Q  161 cattggcaacattgatcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttg 260  Q
    | ||||||| ||  |||||  | |||||||||||||||||||| ||||| | ||||  |||||||| | ||    |||||||||| || || || |||||    
T  39460584 ctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaaggctgtgagggttccatgtttttctctagtagtagtgagattagatacggcttg 39460485  T
Q  261 ttttacgtttggtttctgagcttcgagga 289  Q
    ||| ||||||| |||||||||||||||||    
T  39460484 tttgacgtttgatttctgagcttcgagga 39460456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 39464283 - 39464440
Alignment:
Q  51 cagctgagtcgaatcgacattgtctcgttcacgaagagtgtaaaggtaaagattcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtaggg 150  Q
    ||||||||| |||||||| ||||||||||||   | ||||| ||  | |||||||||||||||| |||||||||  ||||||||||| || | || ||||    
T  39464283 cagctgagttgaatcgacgttgtctcgttcaaacaaagtgtgaatatgaagattcaaaccaaggaaagcaacactcgaagtgaagaacacaaacgcaggg 39464382  T
Q  151 acattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaagg 208  Q
    ||    || || ||||||||||  |||||| |||||||||||||||||||||||||||    
T  39464383 acggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaagg 39464440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 215
Target Start/End: Original strand, 43312315 - 43312426
Alignment:
Q  104 tcaaaccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaac 203  Q
    ||||||||||| |||||||||| ||||||||| | ||||| | |||||||   || ||||| || ||||  |||||||||||||||||||||||||||||    
T  43312315 tcaaaccaaggaaagcaacaccggaagtgaagtagacgagggaagggacaccaaagtcattagctacatcaatcatggtggtgcagaacatgtcaacaac 43312414  T
Q  204 gaaggcggcgag 215  Q
    |||||| |||||    
T  43312415 gaaggcagcgag 43312426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 359
Target Start/End: Complemental strand, 39460428 - 39460389
Alignment:
Q  320 tgtttggaggaagagaaacttctggaaggttgatgatgtc 359  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  39460428 tgtttgggggaagagaaacttctggaaggttgatgatgtc 39460389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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