View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_25 (Length: 274)
Name: NF20817_low_25
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 37777300 - 37777538
Alignment:
| Q |
10 |
aagaatatgaagttataaaagttgtcgtnnnnnnnntagtgaaacgattcacaaaagttttatgtatgtataaaacaactcatacatacatgtggaacga |
109 |
Q |
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| T |
37777300 |
aagaaaatgaagttataaaagttgttgtaaaaaaaatagtgaaacgattcacaaaagttttatgtatgtataaaacaactcatacatacatgtggaacga |
37777399 |
T |
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| Q |
110 |
ttcacttaagttcagcaaacatgttttcttcaaaaaagagtgaaatgatttggtgcttgaagtggaaagattcacactttttctctgactgtgtgaaatg |
209 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37777400 |
ttcacttaagtttagcaaatatgttttcttcaaaaaagagtgaaatgatttggtgcttgaagtggatagattcacactttttctctgactgtgtgaaatg |
37777499 |
T |
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| Q |
210 |
attcacttcgttgcaattcacaagttaaaaatatccaaa |
248 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |
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| T |
37777500 |
attcacttcgctgcaattcacaagttaaaaatatccaaa |
37777538 |
T |
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