View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20817_low_27 (Length: 252)

Name: NF20817_low_27
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20817_low_27
NF20817_low_27
[»] chr8 (4 HSPs)
chr8 (53-242)||(36994093-36994282)
chr8 (53-189)||(37004209-37004345)
chr8 (1-52)||(36994339-36994390)
chr8 (1-52)||(37004402-37004453)
[»] chr4 (6 HSPs)
chr4 (93-189)||(22188770-22188866)
chr4 (1-52)||(13686858-13686909)
chr4 (1-52)||(13688810-13688861)
chr4 (1-52)||(22189229-22189280)
chr4 (54-90)||(22189135-22189171)
chr4 (190-240)||(28085634-28085684)
[»] chr1 (2 HSPs)
chr1 (189-240)||(19481219-19481270)
chr1 (190-240)||(482583-482632)
[»] chr3 (2 HSPs)
chr3 (204-241)||(53981817-53981854)
chr3 (189-241)||(33909480-33909532)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 53 - 242
Target Start/End: Complemental strand, 36994282 - 36994093
Alignment:
Q  53 cgaaacaacacttctttgcattcaccctcaggacattggttctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36994282 cgaaacaacacttctttgcattcaccctcaggacattggttctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgag 36994183  T
Q  153 ggtccccactataaaccaatatatagtcaaagaagagtgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctttg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36994182 ggtccccactataaaccaatatatagtcaaagaagagtgttggaaattctgccccgagcgtgagggggtgtgtcggtaatcccacctttg 36994093  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 37004345 - 37004209
Alignment:
Q  53 cgaaacaacacttctttgcattcaccctcaggacattggttctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgag 152  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||||||||| ||||| |||| | ||| | |||||||    
T  37004345 cgaaacaacacttctttgcattcaccctcaggacattgattcttaacagatcaagtactatcagaagatgatcaatgtattatcagaagacgggcttgag 37004246  T
Q  153 ggtccccactataaaccaatatatagtcaaagaagag 189  Q
    |||||| ||||||||||||| |||  |||||||||||    
T  37004245 ggtccctactataaaccaatctatcatcaaagaagag 37004209  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36994390 - 36994339
Alignment:
Q  1 ccacataaccctttaggatctttgggacaaggccactcttgcattactttaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36994390 ccacataaccctttaggatctttgggacaaggccactcttgcattactttaa 36994339  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37004453 - 37004402
Alignment:
Q  1 ccacataaccctttaggatctttgggacaaggccactcttgcattactttaa 52  Q
    |||| |||||||||||||||||| |||||| |||| ||||||||||||||||    
T  37004453 ccacgtaaccctttaggatcttttggacaatgccagtcttgcattactttaa 37004402  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 22188866 - 22188770
Alignment:
Q  93 tctcaacacaccaagtactatcagaagatgatctatgtactatccggagatgagcttgagggtccccactataaaccaatatatagtcaaagaagag 189  Q
    |||||||||| |  |||||| || || |||||| ||||||||||   ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  22188866 tctcaacacatcgtgtactaccaaaacatgatcaatgtactatcaaaagatgagcttgagggtccccactataaactaatatataatcaaagaagag 22188770  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13686858 - 13686909
Alignment:
Q  1 ccacataaccctttaggatctttgggacaaggccactcttgcattactttaa 52  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  13686858 ccacataactctttaggatctttgggacaaggtcactcttgcattactttaa 13686909  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13688810 - 13688861
Alignment:
Q  1 ccacataaccctttaggatctttgggacaaggccactcttgcattactttaa 52  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  13688810 ccacataactctttaggatctttgggacaaggtcactcttgcattactttaa 13688861  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22189280 - 22189229
Alignment:
Q  1 ccacataaccctttaggatctttgggacaaggccactcttgcattactttaa 52  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  22189280 ccacataactctttaggatctttgagacaaggccactcttgcattactttaa 22189229  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22189171 - 22189135
Alignment:
Q  54 gaaacaacacttctttgcattcaccctcaggacattg 90  Q
    |||||||||||||||||||||||||||||||||||||    
T  22189171 gaaacaacacttctttgcattcaccctcaggacattg 22189135  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 28085634 - 28085684
Alignment:
Q  190 tgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctt 240  Q
    |||||||||| | || |||||||||||||||||||| ||||||| ||||||    
T  28085634 tgttggaaatcccgctccgagcgtgaggggttgtgttggtaatctcacctt 28085684  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 19481219 - 19481270
Alignment:
Q  189 gtgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctt 240  Q
    ||||||||||| | |||||||| |||||||| ||||| ||||||||||||||    
T  19481219 gtgttggaaatcccgccccgagtgtgagggggtgtgttggtaatcccacctt 19481270  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 482583 - 482632
Alignment:
Q  190 tgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccacctt 240  Q
    |||||||||| | ||||||||||||||||| ||||| ||||||||||||||    
T  482583 tgttggaaatcccgccccgagcgtgagggggtgtgt-ggtaatcccacctt 482632  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 53981817 - 53981854
Alignment:
Q  204 ccccgagcgtgaggggttgtgtcggtaatcccaccttt 241  Q
    |||||||||||||||  |||||||||||||||||||||    
T  53981817 ccccgagcgtgagggtgtgtgtcggtaatcccaccttt 53981854  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 33909532 - 33909480
Alignment:
Q  189 gtgttggaaattctgccccgagcgtgaggggttgtgtcggtaatcccaccttt 241  Q
    ||||||||||| || |||| || |||||||| ||||| |||||||||||||||    
T  33909532 gtgttggaaatcctcccccaagtgtgaggggatgtgttggtaatcccaccttt 33909480  T

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