View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20817_low_3 (Length: 622)

Name: NF20817_low_3
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20817_low_3
NF20817_low_3
[»] chr4 (1 HSPs)
chr4 (6-603)||(54423585-54424191)
[»] chr1 (6 HSPs)
chr1 (213-602)||(20120666-20121056)
chr1 (6-219)||(20127319-20127532)
chr1 (60-230)||(27645594-27645764)
chr1 (85-161)||(12461045-12461121)
chr1 (148-212)||(13190645-13190709)
chr1 (60-260)||(44137419-44137619)
[»] chr8 (2 HSPs)
chr8 (85-224)||(9182994-9183133)
chr8 (85-224)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (85-224)||(10161217-10161356)
chr6 (85-161)||(16860983-16861059)
chr6 (104-218)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (85-161)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (97-224)||(238965-239092)


Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 6 - 603
Target Start/End: Original strand, 54423585 - 54424191
Alignment:
Q  6 gatggacatcatcatccaggaagtccactgtgaactgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggat 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423585 gatgcacatcatcatccaggaagtccactgtgaactgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggat 54423684  T
Q  106 atgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagc 205  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423685 atgtcaagtttgagagccacctcacctattttttcttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagc 54423784  T
Q  206 gagaatgcacaaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttagaaacgcgatcttgtataacaca 305  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  54423785 gagaatgcacaaaggctgcctgttcttgggaaatccatttgttaataagtggacgaagacgattgaccaggaccttagaaa--cgatcttgtataacaca 54423882  T
Q  306 ttgcagagagaaataggtcgaaggtcccgcatggatt-cggattatcaccctttggtgcaagcactatgtttgtagcatttaaatct-ggggtagataac 403  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  54423883 ttgcagagagaaataggtcgaaggtcccgcatggattccagattatcaccctttggtgcaagcactatgtttgtagcatttaaatctgggggtagataac 54423982  T
Q  404 tcg--------aagctaaccaagactaggcagaagagaatatttcatccccgatatcttcccaaaatctg-ggtagaaagccgggttaaggctgtctggc 494  Q
    |||        |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||||||  ||||||||||| |||||||    
T  54423983 tcgaagtctcaaagctaaccaagacgaggcagaagagaatatttcatcaccgatatctttccaaaatctgtggtagaaaatcgggttaaggccgtctggc 54424082  T
Q  495 ccaggtgatttatcgggatgcatgttaaaaatagcttccttgaatccctgcttagtgaacggttgagtgagcatggaattatcttcgtcagatatccttg 594  Q
    |||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54424083 ccaggtgatttatccgaatgcatgttaaaaatagcttccttgaattcctgcttagtgaacggttgagtgagcatggaattatcttcgtcagatatccttg 54424182  T
Q  595 gctgaacac 603  Q
    |||||||||    
T  54424183 gctgaacac 54424191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 213 - 602
Target Start/End: Complemental strand, 20121056 - 20120666
Alignment:
Q  213 cacaaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttagaaacgcgatcttgtataacacattgcaga 312  Q
    |||||||||||| ||||||||| |||| |||||||| || | |||| | ||||||||| | ||||||||||| ||   |||||||| |  ||||| ||||    
T  20121056 cacaaaggctgcttgttcttgggaaatccatttgttgattaatggatggagacgattggcaaggaccttagagaca--atcttgtacagtacattacaga 20120959  T
Q  313 gagaaataggtcgaaggtcccgcatggattc-ggattatcaccctttggtgcaagcactatgtttgtagcatttaaatctggggt-agataactcgaagc 410  Q
    |||||||||| |||||||| ||||||||||| ||||| || |||||||| || || |||||||||||| ||||||| |||||||  ||| || | |||||    
T  20120958 gagaaataggccgaaggtctcgcatggattccggattgtctccctttggagcgagaactatgtttgtaacatttaattctgggggcagagaagttgaagc 20120859  T
Q  411 taaccaagactaggcagaagagaatatttcatccccgatatcttcccaaaatctg-ggtagaaagccgggttaaggctgtctggcccaggtgatttatcg 509  Q
     ||||||||| ||||| ||||||| ||||| ||||| || || |||||||| ||  ||||||||||||||||||||| |||||| || || ||||||||     
T  20120858 caaccaagacaaggcaaaagagaaaatttcgtccccaatgtcctcccaaaacctatggtagaaagccgggttaaggccgtctgggcccggggatttatcc 20120759  T
Q  510 ggatgcatgttaaaaatagcttccttgaatccctgcttagtgaacggttgagtgagcatggaattatcttcgtcagatatccttggctgaaca 602  Q
    ||||||||||| ||||| |||||||||||| | ||  ||||||| ||||| ||||| ||||||||||||||||| |||||||||| |||||||    
T  20120758 ggatgcatgttgaaaatggcttccttgaattcatgaatagtgaaaggttgtgtgagaatggaattatcttcgtcggatatccttgactgaaca 20120666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 20127532 - 20127319
Alignment:
Q  6 gatggacatcatcatccaggaagtccactgtgaactgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggat 105  Q
    |||| |||||||||||||||| ||||| ||||||||||| ||||||||||  | ||| | ||||||||| | |||| |||||||||| ||||||||||||    
T  20127532 gatgcacatcatcatccaggaggtccattgtgaactgaaacccattttaaggagaatggatttgaggtaaggccaacttacactatcaaatgccttggat 20127433  T
Q  106 atgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagc 205  Q
    || |||||||| || |||||||| |||||||| |||||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||    
T  20127432 atatcaagttttagtgccacctcgcctattttcccttttgttttgcagcgcatatgatggaggacttcaaaagcggttagcgcattatccatgattgagc 20127333  T
Q  206 gagaatgcacaaag 219  Q
    ||||||||||||||    
T  20127332 gagaatgcacaaag 20127319  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 230
Target Start/End: Original strand, 27645594 - 27645764
Alignment:
Q  60 aatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcata 159  Q
    ||||||||| |||||| ||||  | |||||||| || ||||| || || |||||||| |||||||||||||| ||||| ||||| |||||||||||||||    
T  27645594 aatagctttaaggtacaaccagctaacactatcaaaagccttagagatatcaagtttcagagccacctcaccaattttacctttggttttgcagcgcata 27645693  T
Q  160 tgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttc 230  Q
    ||||| |  | ||| || || ||||  |||||||||||||| ||||| || || || || |||||||||||    
T  27645694 tgatgtaagatttcaaaggccgttaaagcattatccatgatagagcgggagtgaacgaatgctgcctgttc 27645764  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 12461045 - 12461121
Alignment:
Q  85 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 161  Q
    ||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  12461045 acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 12461121  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 13190645 - 13190709
Alignment:
Q  148 ttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatg 212  Q
    ||||| |||||||| ||||||| ||| ||||||||||  |||||||||||||| || ||||||||    
T  13190645 ttgcaccgcatatggtgaagaatttcaaatgctgttaaagcattatccatgatggaacgagaatg 13190709  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 44137619 - 44137419
Alignment:
Q  60 aatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcata 159  Q
    ||||||||  ||||| |||||| ||||||| || || ||||| || ||||| |  || | ||| || ||||| |||||||||||  ||||||| ||||||    
T  44137619 aatagcttcaaggtaggaccaacttacactgtcaaaagccttagagatgtctaacttcaaagcaacttcaccaatttttcctttccttttgcaacgcata 44137520  T
Q  160 tgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttggaaaattcatttgttaataagtggac 259  Q
    || || |||   || |||| |||||  || ||||||||||| || ||||| || |||||||| | ||||||| |  | || ||||||||||| || ||||    
T  44137519 tggtggagagtctcaaatgttgttaaagcgttatccatgatagaacgagagtgaacaaaggcagactgttctggtgagatccatttgttaatgagaggac 44137420  T
Q  260 g 260  Q
    |    
T  44137419 g 44137419  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 9182994 - 9183133
Alignment:
Q  85 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 184  Q
    |||||||| || ||||| || ||||||||||| ||||| || ||||||  |||||||||  | ||||||||||||| ||| |||| ||| || ||||| |    
T  9182994 acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga 9183093  T
Q  185 gcgcattatccatgattgagcgagaatgcacaaaggctgc 224  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  9183094 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 9183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 11625279 - 11625140
Alignment:
Q  85 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 184  Q
    |||||||| || ||||| || ||||||||||| ||||| || |||||| ||||||||||  | ||||||||||||| ||| || | ||| || ||||| |    
T  11625279 acactatcaaaagccttcgaaatgtcaagttttagagctacatcacctttttttcctttattcttgcagcgcatataatgtagtatttcaaaggctgtga 11625180  T
Q  185 gcgcattatccatgattgagcgagaatgcacaaaggctgc 224  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  11625179 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 11625140  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 10161217 - 10161356
Alignment:
Q  85 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 184  Q
    |||||||| || ||||| || ||||||||||| ||||| || ||||||  |||||||||  | ||||||||||||| ||| |||| ||| || ||||| |    
T  10161217 acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga 10161316  T
Q  185 gcgcattatccatgattgagcgagaatgcacaaaggctgc 224  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  10161317 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 10161356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 16861059 - 16860983
Alignment:
Q  85 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 161  Q
    ||||| || ||||| ||||||||||||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  16861059 acactgtcaaatgctttggatatgtcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 16860983  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 21740989 - 21741103
Alignment:
Q  104 atatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattga 203  Q
    |||| |||||||| | ||||||||||||| | || ||||| | ||| || |||||||||||||||| |||| ||||  | || ||||| ||||| || ||    
T  21740989 atatatcaagtttcaaagccacctcacctttcttccctttcgatttacaacgcatatgatgaagaatttcgtatgccatcagagcattgtccataatgga 21741088  T
Q  204 gcgagaatgcacaaa 218  Q
    | ||||||| |||||    
T  21741089 gagagaatggacaaa 21741103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 1937 - 2013
Alignment:
Q  85 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 161  Q
    ||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  1937 acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 238965 - 239092
Alignment:
Q  97 gccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatcca 196  Q
    ||||||||||| ||||| || | ||||||||| || ||||| |||||| | ||||| ||||||   ||||||| ||| || |||| ||| ||||||||||    
T  238965 gccttggatatatcaagctttaaagccacctcgccaattttaccttttttcttgcatcgcataaagtgaagaatttcaaaggctgatagagcattatcca 239064  T
Q  197 tgattgagcgagaatgcacaaaggctgc 224  Q
    |||| || | |||  | |||||||||||    
T  239065 tgatggatctagatggaacaaaggctgc 239092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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