View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20817_low_31 (Length: 238)

Name: NF20817_low_31
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20817_low_31
NF20817_low_31
[»] chr2 (16 HSPs)
chr2 (1-192)||(7395246-7395434)
chr2 (2-163)||(9001758-9001920)
chr2 (2-107)||(8997890-8997996)
chr2 (62-163)||(9001656-9001757)
chr2 (2-106)||(8164603-8164708)
chr2 (2-78)||(8168461-8168537)
chr2 (62-138)||(9001579-9001655)
chr2 (4-154)||(26383786-26383936)
chr2 (101-146)||(23243735-23243780)
chr2 (87-143)||(34603771-34603827)
chr2 (50-94)||(13794535-13794580)
chr2 (87-138)||(4876613-4876663)
chr2 (76-150)||(2548348-2548422)
chr2 (41-148)||(28699853-28699962)
chr2 (89-149)||(2218814-2218874)
chr2 (102-150)||(11838623-11838671)
[»] chr7 (26 HSPs)
chr7 (4-199)||(5332740-5332933)
chr7 (4-199)||(5328415-5328608)
chr7 (2-163)||(37283092-37283253)
chr7 (2-163)||(37278904-37279065)
chr7 (2-163)||(15828677-15828839)
chr7 (4-154)||(12529611-12529762)
chr7 (2-106)||(37973613-37973718)
chr7 (2-106)||(15835172-15835277)
chr7 (4-95)||(21627220-21627311)
chr7 (1-107)||(45486489-45486596)
chr7 (62-138)||(15828840-15828916)
chr7 (39-138)||(362364-362463)
chr7 (62-138)||(37279066-37279142)
chr7 (68-138)||(5328582-5328653)
chr7 (4-95)||(12538663-12538754)
chr7 (91-138)||(357768-357815)
chr7 (39-108)||(357635-357705)
chr7 (102-146)||(779367-779411)
chr7 (97-146)||(3100802-3100851)
chr7 (101-144)||(2724441-2724484)
chr7 (76-138)||(23522523-23522584)
chr7 (59-139)||(11099974-11100054)
chr7 (50-150)||(12257439-12257540)
chr7 (62-138)||(11544559-11544634)
chr7 (62-106)||(37283254-37283298)
chr7 (2-42)||(44727002-44727042)
[»] chr6 (11 HSPs)
chr6 (4-192)||(11694498-11694683)
chr6 (4-164)||(4279694-4279855)
chr6 (2-198)||(34336315-34336509)
chr6 (2-163)||(26455676-26455838)
chr6 (4-106)||(4282976-4283079)
chr6 (4-78)||(22622781-22622855)
chr6 (2-67)||(26459787-26459852)
chr6 (80-146)||(23107328-23107394)
chr6 (62-108)||(26455629-26455675)
chr6 (101-146)||(23107530-23107575)
chr6 (59-138)||(17997071-17997150)
[»] chr5 (12 HSPs)
chr5 (4-172)||(40569654-40569823)
chr5 (4-172)||(40572490-40572659)
chr5 (2-172)||(43041607-43041779)
chr5 (82-172)||(40572672-40572762)
chr5 (82-172)||(40572879-40572969)
chr5 (82-172)||(40572982-40573072)
chr5 (2-106)||(35415487-35415592)
chr5 (82-172)||(40572775-40572866)
chr5 (82-138)||(40569836-40569892)
chr5 (101-147)||(40227738-40227784)
chr5 (62-138)||(8459995-8460070)
chr5 (41-146)||(20675951-20676057)
[»] chr3 (30 HSPs)
chr3 (1-172)||(2692459-2692631)
chr3 (1-199)||(11134187-11134382)
chr3 (1-172)||(5195225-5195398)
chr3 (4-164)||(19789757-19789918)
chr3 (2-163)||(19803317-19803479)
chr3 (4-164)||(19777468-19777629)
chr3 (2-164)||(20008829-20008993)
chr3 (2-106)||(19808567-19808672)
chr3 (1-106)||(2688850-2688956)
chr3 (82-164)||(20009014-20009096)
chr3 (1-106)||(11137421-11137527)
chr3 (67-138)||(2692390-2692462)
chr3 (62-138)||(19803480-19803556)
chr3 (2-78)||(20012649-20012725)
chr3 (87-154)||(5195141-5195208)
chr3 (82-138)||(20009117-20009173)
chr3 (4-107)||(33481252-33481356)
chr3 (4-107)||(33485042-33485146)
chr3 (87-138)||(19777656-19777707)
chr3 (103-151)||(28426280-28426328)
chr3 (83-146)||(10497458-10497521)
chr3 (87-138)||(12206950-12207001)
chr3 (87-148)||(15926945-15927005)
chr3 (63-107)||(11134352-11134396)
chr3 (102-152)||(809229-809279)
chr3 (97-151)||(6132742-6132796)
chr3 (97-146)||(11513461-11513510)
chr3 (62-114)||(94770-94822)
chr3 (102-146)||(809034-809078)
chr3 (95-127)||(45841772-45841804)
[»] scaffold2018 (1 HSPs)
scaffold2018 (4-164)||(874-1035)
[»] chr1 (15 HSPs)
chr1 (4-172)||(19911335-19911504)
chr1 (4-164)||(19913996-19914157)
chr1 (1-164)||(12098812-12098976)
chr1 (78-199)||(546374-546492)
chr1 (82-172)||(19911517-19911607)
chr1 (67-153)||(546465-546552)
chr1 (4-106)||(555605-555708)
chr1 (63-152)||(12098977-12099067)
chr1 (41-150)||(52909672-52909782)
chr1 (82-138)||(19911620-19911677)
chr1 (87-150)||(19454122-19454185)
chr1 (4-58)||(546320-546374)
chr1 (87-149)||(20194664-20194726)
chr1 (101-150)||(40608744-40608793)
chr1 (62-138)||(24277058-24277133)
[»] chr8 (22 HSPs)
chr8 (4-162)||(25547695-25547854)
chr8 (2-163)||(5009843-5010005)
chr8 (4-161)||(25555088-25555246)
chr8 (4-161)||(25559967-25560125)
chr8 (4-163)||(18972974-18973134)
chr8 (4-163)||(18977489-18977649)
chr8 (4-138)||(26905456-26905591)
chr8 (62-163)||(18972872-18972973)
chr8 (62-163)||(18977387-18977488)
chr8 (4-95)||(25502430-25502521)
chr8 (62-154)||(5010006-5010100)
chr8 (62-138)||(18977310-18977386)
chr8 (4-146)||(16077957-16078099)
chr8 (4-138)||(17526764-17526898)
chr8 (62-152)||(25554994-25555085)
chr8 (62-152)||(25559873-25559964)
chr8 (2-61)||(26908723-26908782)
chr8 (94-138)||(26905742-26905786)
chr8 (87-138)||(4-55)
chr8 (87-138)||(31710953-31711003)
chr8 (87-138)||(44754011-44754062)
chr8 (62-146)||(15699510-15699594)
[»] chr4 (18 HSPs)
chr4 (2-163)||(726091-726253)
chr4 (4-106)||(29724886-29724989)
chr4 (2-106)||(722575-722680)
chr4 (62-138)||(726013-726090)
chr4 (89-150)||(52388656-52388717)
chr4 (87-148)||(22762831-22762892)
chr4 (93-146)||(12327691-12327744)
chr4 (95-144)||(22762731-22762780)
chr4 (81-150)||(36539625-36539694)
chr4 (101-150)||(36539827-36539876)
chr4 (87-139)||(20503031-20503083)
chr4 (99-146)||(16483306-16483353)
chr4 (87-138)||(28924965-28925016)
chr4 (41-150)||(49022541-49022652)
chr4 (76-150)||(12195484-12195557)
chr4 (87-139)||(10757069-10757120)
chr4 (87-139)||(10970240-10970291)
chr4 (97-137)||(12417086-12417126)
[»] scaffold0010 (2 HSPs)
scaffold0010 (2-163)||(244949-245111)
scaffold0010 (62-138)||(244872-244948)
[»] scaffold0272 (1 HSPs)
scaffold0272 (4-95)||(4779-4871)
[»] scaffold0011 (2 HSPs)
scaffold0011 (80-146)||(253968-254034)
scaffold0011 (80-146)||(260574-260640)
[»] scaffold0013 (2 HSPs)
scaffold0013 (87-138)||(133740-133791)
scaffold0013 (87-138)||(138269-138320)
[»] scaffold0374 (1 HSPs)
scaffold0374 (42-150)||(12100-12210)
[»] scaffold0076 (1 HSPs)
scaffold0076 (92-138)||(49576-49622)
[»] scaffold0044 (1 HSPs)
scaffold0044 (80-146)||(84797-84863)
[»] scaffold0064 (1 HSPs)
scaffold0064 (87-144)||(26038-26095)
[»] scaffold0474 (1 HSPs)
scaffold0474 (106-150)||(6280-6324)
[»] scaffold0001 (2 HSPs)
scaffold0001 (87-135)||(30157-30205)
scaffold0001 (87-135)||(35464-35512)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7395246 - 7395434
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatga 99  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  7395246 ggacggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatga 7395345  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctggagggctttgagccctt 192  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    |||||||||||||||||||||    
T  7395346 cggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcct----gctggagggctttgagccctt 7395434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 9001920 - 9001758
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  9001920 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 9001821  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  9001820 ggtccacagccctccaagcacgaggcttggaacaaggcgtggtgattaataatgtggatttgg 9001758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 8997996 - 8997890
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||     
T  8997996 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcacctaaacccttctggagggcttttaagcccttaggaatattatgac 8997897  T
Q  101 ggtccac 107  Q
    |||||||    
T  8997896 ggtccac 8997890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 9001757 - 9001656
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggattt 161  Q
    ||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||   ||||| ||||||||||||||    
T  9001757 cccttctggagggcttttaaccctaaggaatattatgacggtccacagccccccaagcacgaggcttggtacaaggcgtggtgattaataatgtggattt 9001658  T
Q  162 gg 163  Q
    ||    
T  9001657 gg 9001656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 8164708 - 8164603
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || ||||||||||     
T  8164708 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttatggagggcttttaagcccttagaaatattatgac 8164609  T
Q  101 ggtcca 106  Q
    ||||||    
T  8164608 ggtcca 8164603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 8168537 - 8168461
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttt 78  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8168537 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttt 8168461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 9001655 - 9001579
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  9001655 cccttctggagggcttttaaccctaaggaatattatgacggtccacagccccccaagcacgaggcttggtacaaggc 9001579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 26383936 - 26383786
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctt-tgagccctcaggaatattatgatgg 102  Q
    ||||||||||||||||| || ||| |||||| | || |||||||  |||||| |||| ||||||| |||||||| | |||| | ||||||||||||| ||    
T  26383936 cggcgtcctaaggaggacgcacctggacctcaatag-cccttctggagggcgtctaagcccttctagagggcttctaagcctttaggaatattatgacgg 26383838  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatg 154  Q
    |   ||| |||||||||||||| ||||| ||||||| |||||||||| ||||    
T  26383837 ttttcagtcccccaagcacgagtcttgggacaaggcgaagtgatgaaaaatg 26383786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 23243780 - 23243735
Alignment:
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||    
T  23243780 ggtccacagccccccaagcacgagtcttgggacaaggcaaagtgat 23243735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 34603827 - 34603771
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagt 143  Q
    ||||||| ||||| | | |||||||||||||||||||| ||||||||||||||||||    
T  34603827 aggaatagtatgacgtttcacagccccccaagcacgagtcttggaacaaggcaaagt 34603771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 13794535 - 13794580
Alignment:
Q  50 agggcgcctaaacccttctggagggc-tttgagccctcaggaatat 94  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  13794535 agggcgcctaaacccttctggagggcgtttgagcccttaggaatat 13794580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 4876663 - 4876613
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||||||||||||||||||||| |||||||||| || ||||| |||||||    
T  4876663 aggaatattatgatggtccacagc-ccccaagcacaagtcttggtacaaggc 4876613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 2548422 - 2548348
Alignment:
Q  76 tttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    |||||||||| ||||||||  |||||||||||| ||||||||  ||||| ||| | ||||| | |||||||||||    
T  2548422 tttgagcccttaggaatatactgatggtccacatccccccaaatacgagtcttaggacaagacgaagtgatgaat 2548348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 28699853 - 28699962
Alignment:
Q  41 cccttctatagggcgcctaaacccttctggagggcttt-gagccctcaggaatattatgatggtccacagccccccaagcacgaggctt-ggaacaaggc 138  Q
    |||||||  ||||||||||| || |||| |||||| || ||||||| ||||||||  ||| |||||| ||| |||||||||||||  || ||||| ||||    
T  28699853 cccttctggagggcgcctaagcctttctagagggcattcgagcccttaggaatatattgacggtccatagctccccaagcacgagctttgggaaccaggc 28699952  T
Q  139 aaagtgatga 148  Q
     |||||||||    
T  28699953 gaagtgatga 28699962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 2218814 - 2218874
Alignment:
Q  89 gaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaa 149  Q
    |||||| |||||||| ||||| |||||||||||||| ||||  ||||||  ||||||||||    
T  2218814 gaatatgatgatggttcacagtcccccaagcacgagtcttgagacaaggtgaagtgatgaa 2218874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 11838671 - 11838623
Alignment:
Q  102 gtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    |||||||||||  ||| |||||| ||||||||||||| |||||||||||    
T  11838671 gtccacagcccatcaatcacgagtcttggaacaaggcgaagtgatgaat 11838623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 5332740 - 5332933
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||    
T  5332740 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacgg 5332839  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctggagggctttgagccct-taggaata 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    |||||||||||||||||||| ||||||||    
T  5332840 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcct----gctggagggctttgagccctataggaata 5332933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 5328415 - 5328608
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||| ||    
T  5328415 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttatggagggcttttaagcccttaggaatattatgacgg 5328514  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctggagggctttgagccct-taggaata 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    | |||||||||||||||||| ||||||||    
T  5328515 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcct----gttggagggctttgagccctataggaata 5328608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 37283092 - 37283253
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatattatgatg 101  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |    
T  37283092 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggctttaagcccttaggaatattatgacg 37283191  T
Q  102 gtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    ||||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  37283192 gtccacagccctccaagcacgaggcttggaacaaggcgtggtgattaataatgtggatttgg 37283253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 37278904 - 37279065
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatattatgatg 101  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |    
T  37278904 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggctttaagcccttaggaatattatgacg 37279003  T
Q  102 gtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    ||||||||||| |||||||||||||||||||||||||   ||||| |||||| |||||||||    
T  37279004 gtccacagccctccaagcacgaggcttggaacaaggcgtggtgattaataatatggatttgg 37279065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 15828677 - 15828839
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  15828677 gacggcgccctgaggaggacgcgcctaggcctctaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 15828776  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  15828777 ggtccacagccctccaagcacgaggcttggaacaaggcgtggtgattaataatgtggatttgg 15828839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 12529611 - 12529762
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||| ||||||| |||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||| | |||| ||||||| |||||| ||    
T  12529611 cggcgtcctgaggaggacgcgcctagaccttcatcgtcccttctatagggcgcctaaacccttctagagggcttttaacccttaggaatatttatgacgg 12529710  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatg 154  Q
    |||||||||||| |||||||||||||||||| |||| ||||||| |||||||    
T  12529711 tccacagccccctaagcacgaggcttggaacgaggcgaagtgattaataatg 12529762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 37973613 - 37973718
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||     
T  37973613 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagctcttaggaatattatgac 37973712  T
Q  101 ggtcca 106  Q
    ||||||    
T  37973713 ggtcca 37973718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 15835172 - 15835277
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||     
T  15835172 gacggcgccctgaggaggacgcgcctaggcctctaaagtcccttctatagggcgcctaaacccttcaggagggcttttaagcccttaggaatattatgac 15835271  T
Q  101 ggtcca 106  Q
    ||||||    
T  15835272 ggtcca 15835277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 21627311 - 21627220
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatatt 95  Q
    ||||||||| ||||||| |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||    
T  21627311 cggcgtcctgaggaggacgcgcctagacctccatcgtcccttctatagggcgcctaaacccttctagagggcttttaacccttaggaatatt 21627220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 45486596 - 45486489
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatga 99  Q
    |||||||||||| |||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| | ||||  ||||||||||||    
T  45486596 ggacggcgtcctgaggaggacccgcctagacctccagggtcccttctatagggcgcctaaacccttctggagggcttttaaacccttgggaatattatga 45486497  T
Q  100 tggtccac 107  Q
     |||||||    
T  45486496 cggtccac 45486489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 15828840 - 15828916
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  15828840 cccttctggagggcttttaaccctaaggaatattatgacggtccacagccccccaagcacgaggcttggtacaaggc 15828916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 362364 - 362463
Alignment:
Q  39 gtcccttctatagggcgcctaaacccttctggagggcttt-gagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaagg 137  Q
    |||||||||  ||||||||||| ||||| ||||||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||    
T  362364 gtcccttctggagggcgcctaagcccttttggagggcttttgagcccttaggaatattatgacggtccacag-cccccaaacacgagggttggaacaagg 362462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 37279066 - 37279142
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||| ||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37279066 cccttcttgagggcttttaaccctaaggaatattatgacggtccacagccccccaagcacgaggcttggtacaaggc 37279142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 5328582 - 5328653
Alignment:
Q  68 tggagggctttgagccctc-aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  5328582 tggagggctttgagccctataggaatattatgacggtccacagccccccaagcacgaggattggaacaaggc 5328653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 12538663 - 12538754
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatatt 95  Q
    ||||||||| ||||||| |||||||||||| ||  |||||||||||||||||||||||||||||  ||||||||| | |||| |||||||||    
T  12538663 cggcgtcctgaggaggacgcgcctagaccttcatcgtcccttctatagggcgcctaaacccttccagagggcttttaacccttaggaatatt 12538754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 357768 - 357815
Alignment:
Q  91 atattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  357768 atattatgacggtccacagccccccaagcacgaggcttggaacaaggc 357815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 357635 - 357705
Alignment:
Q  39 gtcccttctatagggcgcctaaacccttctggagggcttt-gagccctcaggaatattatgatggtccaca 108  Q
    |||||||||  ||||||||||| ||||| ||||||||||| ||||||| ||||||||||||| ||||||||    
T  357635 gtcccttctggagggcgcctaagcccttttggagggcttttgagcccttaggaatattatgacggtccaca 357705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 779367 - 779411
Alignment:
Q  102 gtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  779367 gtccacaaccccccaagcacgagtcttggaacaaggcaaagtgat 779411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 3100802 - 3100851
Alignment:
Q  97 tgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||||||||||| || |||||||||| ||||| |||||||||||||||    
T  3100802 tgatggtccacagctccacaagcacgagtcttgggacaaggcaaagtgat 3100851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 2724484 - 2724441
Alignment:
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtg 144  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||    
T  2724484 ggtccacagccccccaagcacgagtcttgggacaaggcgaagtg 2724441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 23522523 - 23522584
Alignment:
Q  76 tttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||| ||| ||||||||||||| ||||||||| ||||||||||| || ||||| |||||||    
T  23522523 tttgagtccttaggaatattatgacggtccacag-cccccaagcacaagtcttggtacaaggc 23522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 11100054 - 11099974
Alignment:
Q  59 aaacccttctggagggctttgagc-cctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    |||||||| |||||| |||| ||  ||| ||||||||||||| |||||||||| |||||||||| || ||||| ||||||||    
T  11100054 aaacccttttggaggtctttcaggtccttaggaatattatgacggtccacagc-ccccaagcacaagtcttggtacaaggca 11099974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 12257439 - 12257540
Alignment:
Q  50 agggcgcctaaacccttctggagggctttgag-ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatga 148  Q
    ||||||||| | || |||| ||||||||| || |||| | ||||||  ||| |||||||  |||||||||||||||  |||| ||||||| |||||||||    
T  12257439 agggcgcctgagcctttctagagggctttcaggcccttatgaatatattgacggtccacgtccccccaagcacgagttttgggacaaggcgaagtgatga 12257538  T
Q  149 at 150  Q
    ||    
T  12257539 at 12257540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 11544634 - 11544559
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||| |||||| |||| || ||| |||||| |||||| |||||||||| |||||||||| || ||||| |||||||    
T  11544634 cccttttggaggtctttaagtccttaggaattttatgacggtccacagc-ccccaagcacaagtcttggtacaaggc 11544559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 37283254 - 37283298
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtcca 106  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||    
T  37283254 cccttctggagggcttttaaccctaaggaatattatgacggtcca 37283298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 44727002 - 44727042
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcc 42  Q
    ||||||| ||| |||| ||||||||||||||||||||||||    
T  44727002 gacggcgccctgaggaagatgcgcctagacctccaaagtcc 44727042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 11694683 - 11694498
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatgatgg 102  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||    
T  11694683 cggcgtcctgaggagaacgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctggagggcttttaagcccttaggaatattatgacgg 11694584  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctggagggctttgagccctt 192  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    |||||||||||||||||||||    
T  11694583 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcct----gctggagggctttgagccctt 11694498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 4279694 - 4279855
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| ||    
T  4279694 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagtccttaggaatattatgacgg 4279793  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  4279794 tccacagccccccaagcacgaggcttggaacaagacgaagtgatgaataatgtggatttggt 4279855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 34336315 - 34336509
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttg-agccctc-aggaatattatga 99  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||  |||||| ||||||    
T  34336315 gacggcgccctgaggaagatgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctagagggcttttcagccctttaggaattttatga 34336414  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctggagggctttgagcccttaggaat 198  Q
     ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    ||||||||||||||| ||| |||||||    
T  34336415 cggtccacagcctcccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcct----gctggagggctttgaacccataggaat 34336509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 26455838 - 26455676
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  26455838 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 26455739  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    | |||| |||||||||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  26455738 gatccatagccccccaagcacgaggcttggaacaaggcgtggtgattaataatgtggatttgg 26455676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 4282976 - 4283079
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| ||    
T  4282976 cggcgtcctgaggaggacgcacctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagtccttaggaatattatgacgg 4283075  T
Q  103 tcca 106  Q
    ||||    
T  4283076 tcca 4283079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 22622781 - 22622855
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttt 78  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22622781 cggcgtcctgaggaggacacgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttt 22622855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26459852 - 26459787
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttc 67  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  26459852 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttc 26459787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 23107394 - 23107328
Alignment:
Q  80 agccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||| |||||||| ||||  ||||||| | ||||||||||||| ||||| |||| ||||||||||    
T  23107394 agcccttaggaatataatgaaagtccacaactccccaagcacgagtcttgggacaatgcaaagtgat 23107328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 26455675 - 26455629
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccaca 108  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||    
T  26455675 cccttctggagggcttttaaccctaaggaatattatgacggtccaca 26455629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 23107575 - 23107530
Alignment:
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    ||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  23107575 ggtccacagccgcccaagcacgagccttgggacaaggcgaagtgat 23107530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 17997071 - 17997150
Alignment:
Q  59 aaacccttctggagggctttgagc-cctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||||| |||||| |||| ||  ||| ||||||||||||| ||||||||| ||||||||||| || ||||| |||||||    
T  17997071 aaacccttttggaggtctttcaggtccttaggaatattatgacggtccacag-cccccaagcacaagtcttggtacaaggc 17997150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 40569654 - 40569823
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| |||||| ||    
T  40569654 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctggagggcttttaacccttaggaatatttatgacgg 40569753  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40569754 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 40569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 40572490 - 40572659
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatatt-atgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | |||| ||||||||| |||| ||    
T  40572490 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctggagggcttgtaacccttaggaatatttatgacgg 40572589  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40572590 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 40572659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 43041779 - 43041607
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctc-aggaatattatga 99  Q
    ||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||  |||||| ||||||    
T  43041779 gacggcgccctgaggaggacgcgcctaaacctccaaagtcccttctatagggcgccttaacctttctggagggcttttaagccctttaggaattttatga 43041680  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43041679 cggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggtcctgctgg 43041607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 40572672 - 40572762
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40572672 cccttaggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 40572762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 40572879 - 40572969
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40572879 cccttaggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 40572969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 40572982 - 40573072
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40572982 cccttaggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 40573072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 35415592 - 35415487
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  35415592 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 35415493  T
Q  101 ggtcca 106  Q
    ||||||    
T  35415492 ggtcca 35415487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 40572775 - 40572866
Alignment:
Q  82 ccctcaggaatatta-tgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  40572775 cccttaggaatattaatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 40572866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 40569836 - 40569892
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  40569836 cccttaggaatattatgacggtccacagccccccaagcacgaggcttggtacaaggc 40569892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 40227784 - 40227738
Alignment:
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatg 147  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  40227784 ggtccacagtcccccaagcacgagtcttggaacaaggcgaagtgatg 40227738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 8460070 - 8459995
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||| |||||| |||| || ||| ||||||||||||| |||||||||| |||||||||| || ||||| |||||||    
T  8460070 cccttttggaggtctttaagtccttaggaatattatgacggtccacagc-ccccaagcacaagtcttggtacaaggc 8459995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 20675951 - 20676057
Alignment:
Q  41 cccttctatagggcgcctaaacccttctggagggctt-tgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    |||||||| |||||| |||| |||| || ||||| || | |||| | ||||||||||||| ||| |||||||||||||||| ||| ||  | |||||||     
T  20675951 cccttctagagggcgtctaagccctcctagagggtttctaagcctttaggaatattatgacggttcacagccccccaagcatgagtctctggacaaggcg 20676050  T
Q  140 aagtgat 146  Q
    |||||||    
T  20676051 aagtgat 20676057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 2692631 - 2692459
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatga 99  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| | |||||||||||||    
T  2692631 ggacggcgtcctgaggacgacgcgcctagacctccaaagtcccttctataaggcgcctaaacccttctggagggcttttaagcctttaggaatattatga 2692532  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  2692531 cggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 2692459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11134187 - 11134382
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatga 99  Q
    |||| ||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||    
T  11134187 ggaccgcgtcctgaggaggacgtgcctagacctccaaagccccttctatagggcgtctaaacccttctggagggcttttaagcccttaggaatattatga 11134286  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctggagggctttgagcccttaggaata 199  Q
     |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||     ||||||||||||||||||||| |||||    
T  11134287 cggtccacaaccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtagatttggtcct----tctggagggctttgagcccttatgaata 11134382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 5195398 - 5195225
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctc-aggaatattatg 98  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||||||    
T  5195398 ggacggcatcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctggagggcttttaagccctttaggaatattatg 5195299  T
Q  99 atggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    | |||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  5195298 acggtccacagccctccaagcacgaggcttggaacaagacgaagtgatgaataatgtggatttggtcctgctgg 5195225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 19789918 - 19789757
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatgatgg 102  Q
    ||||||| | |||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||    
T  19789918 cggcgtcttgaggaggacccgcctagacctccagggtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacgg 19789819  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  19789818 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataaggtggatttggt 19789757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 19803317 - 19803479
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  19803317 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 19803416  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  19803417 ggtccacagccctccaagcacgaggcttggaacaaggcgtggtgattaataatgtggatttgg 19803479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 19777468 - 19777629
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatgatgg 102  Q
    ||||||| | |||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||    
T  19777468 cggcgtcttgaggaggacccgcctagacctccagggtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgacgg 19777567  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  19777568 tccacaaccccccaagcacgaggcttggaacaaggcgaagtgatgaataaggtggatttggt 19777629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 20008829 - 20008993
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctc-aggaatattatga 99  Q
    ||||||| ||| ||||||| ||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||  |||||| ||||||    
T  20008829 gacggcgccctgaggaggacgcgcctgaacctccaaagtcccttctatagggcgccttaacctttctggagggcttttaagccctttaggaattttatga 20008928  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20008929 cggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggt 20008993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 19808567 - 19808672
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttt-gagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||     
T  19808567 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaacccttctggagggctttcaagcccttaggaatattatgac 19808666  T
Q  101 ggtcca 106  Q
    ||||||    
T  19808667 ggtcca 19808672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2688956 - 2688850
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatga 99  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  2688956 ggacggcgtcctgaggacgacgcgcctagacctccaaagtcccttctataaggcgcctaaacccttctggagggcttttaagcctttaggaatattatga 2688857  T
Q  100 tggtcca 106  Q
     ||||||    
T  2688856 cggtcca 2688850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 20009014 - 20009096
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20009014 cccttaggaatattatgacggtccacagccctccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggt 20009096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11137421 - 11137527
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatga 99  Q
    |||||||||||| ||||||| | || ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||    
T  11137421 ggacggcgtcctgaggaggacgtgcatagacctccaaagtcccttctatagagcgtctaaacccttctggagggcttttaagcccttaggaatattatga 11137520  T
Q  100 tggtcca 106  Q
     ||||||    
T  11137521 cggtcca 11137527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 2692462 - 2692390
Alignment:
Q  67 ctggagggctttgagccctc-aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2692462 ctggagggcttttagccctttaggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggc 2692390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 19803480 - 19803556
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||    
T  19803480 cccttctggagggcttttaaccctaaggaatattatgacggtccacagccccccaagcgcgaggcttggtacaaggc 19803556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 20012649 - 20012725
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttt 78  Q
    ||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  20012649 gacggcgccctgaggaggacgcgcctaaacctccaaagtcccttctatagggcgccttaacctttctggagggcttt 20012725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 5195208 - 5195141
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatg 154  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5195208 aggaattttatgacggtccacagccctccaagcacgaggcttggaacaaggcgaagtgatgaataatg 5195141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 20009117 - 20009173
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  20009117 cccttaggaatattatgacggtccacagccctccaagcacgaggcttggaacaaggc 20009173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 33481252 - 33481356
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    |||| |||| ||||||  ||||| |||||||||  |||||||||||||||||||||||||||||| |||||| || | |||| ||||||| |||||| ||    
T  33481252 cggcatcctgaggagggggcgcccagacctccatcgtcccttctatagggcgcctaaacccttctagagggccttcaacccttaggaatatttatgacgg 33481351  T
Q  103 tccac 107  Q
    |||||    
T  33481352 tccac 33481356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 33485042 - 33485146
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    |||| |||| ||||||  ||||| |||||||||  |||||||||||||||||||||||||||||| |||||| || | |||| ||||||| |||||| ||    
T  33485042 cggcatcctgaggagggggcgcccagacctccatcgtcccttctatagggcgcctaaacccttctagagggccttcaacccttaggaatatttatgacgg 33485141  T
Q  103 tccac 107  Q
    |||||    
T  33485142 tccac 33485146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 19777656 - 19777707
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  19777656 aggaattttatgacggtccacaaccccccaagcacgaggcttggaacaaggc 19777707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 28426328 - 28426280
Alignment:
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaata 151  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||    
T  28426328 tccacagccccccaagcacgagtcttggtacaaggcaaattgatgaata 28426280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 10497521 - 10497458
Alignment:
Q  83 cctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    ||||||||||||  ||| ||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  10497521 cctcaggaatatattgacggtccacagccacccaagcacgagtcttgggacaaggcgaagtgat 10497458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 12206950 - 12207001
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  12206950 aggaatattatgacggtccacagcccaccaagcatgagtcttggaacaaggc 12207001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 15926945 - 15927005
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatga 148  Q
    ||||||||||||| ||| ||||||||| |||||||||| ||||| ||||||| |||||||||    
T  15926945 aggaatattatgaaggttcacagcccc-caagcacgagtcttgggacaaggcgaagtgatga 15927005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 11134352 - 11134396
Alignment:
Q  63 ccttctggagggctttgagccctcaggaatattatgatggtccac 107  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||    
T  11134352 ccttctggagggctttgagcccttatgaatattatgacggtccac 11134396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 809279 - 809229
Alignment:
Q  102 gtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataa 152  Q
    ||||||| ||||||||||||||| ||||  | |||||||||||||||||||    
T  809279 gtccacaaccccccaagcacgagtcttgagagaaggcaaagtgatgaataa 809229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 6132742 - 6132796
Alignment:
Q  97 tgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaata 151  Q
    ||||| ||||||| ||||||| |||||| ||||||||||||| ||||||| ||||    
T  6132742 tgatgatccacaggcccccaaacacgagtcttggaacaaggcgaagtgataaata 6132796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 11513510 - 11513461
Alignment:
Q  97 tgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||| ||||||||||||||||||||||| ||||| ||||||  |||||||    
T  11513510 tgatagtccacagccccccaagcacgagtcttgggacaaggtgaagtgat 11513461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 94770 - 94822
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccc 114  Q
    ||||| |||||| |||| || ||| ||||||||||||| ||||||||||||||    
T  94770 cccttttggaggtctttaagtccttaggaatattatgacggtccacagccccc 94822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 809078 - 809034
Alignment:
Q  102 gtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    ||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  809078 gtccacagccccccaagaacgagtcttgggacaaggcgaagtgat 809034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 45841804 - 45841772
Alignment:
Q  95 tatgatggtccacagccccccaagcacgaggct 127  Q
    ||||| |||||||||||||||||||||||||||    
T  45841804 tatgagggtccacagccccccaagcacgaggct 45841772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2018 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold2018
Description:

Target: scaffold2018; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 1035 - 874
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||| ||    
T  1035 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagtccttaggaatattatgacgg 936  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  935 tccacagccccccaagcacgaggcttggaacaagacgaagtgatgaataatgtggatttggt 874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 19911335 - 19911504
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatatt-atgatgg 102  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||| ||||||||| |||| ||    
T  19911335 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggtgcctaagcccttctggagggcttttaacccttaggaatatttatgacgg 19911434  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19911435 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 19911504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 19913996 - 19914157
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| |||||| ||    
T  19913996 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctggagggcttttaacccttaggaatatttatgacgg 19914095  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19914096 tccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggt 19914157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 12098812 - 12098976
Alignment:
Q  1 ggacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgag-ccctcaggaatattatga 99  Q
    |||||||||||| |||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |  ||||  ||||||||||||    
T  12098812 ggacggcgtcctgaggaggacccgcctagacctccagggtcccttctatagggcgcctaaacccttctggagggcttttaaacccttgggaatattatga 12098911  T
Q  100 tggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggt 164  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  12098912 cggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataaggtggatttggt 12098976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 546374 - 546492
Alignment:
Q  78 tgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctggctgga 177  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||    ||||||    
T  546374 tgagcccttaggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaatagtgtggatttggtcct----gctgga 546469  T
Q  178 gggctttgagccct-taggaata 199  Q
    |||||||||||||| ||||||||    
T  546470 gggctttgagccctataggaata 546492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 19911517 - 19911607
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttggttctgctgg 172  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  19911517 cccttaggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataatgtggatttggtcctgctgg 19911607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 546465 - 546552
Alignment:
Q  67 ctggagggctttgagccctc-aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataat 153  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  546465 ctggagggctttgagccctataggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgataaataat 546552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 555605 - 555708
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| |||||||||||||| | ||| |||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||| ||    
T  555605 cggcgtcctgaggaggacgcgcctagacctccgaggtctcttctatagggcgcctaagcccttctggagggcttttaagcccttaggaatattatgacgg 555704  T
Q  103 tcca 106  Q
    ||||    
T  555705 tcca 555708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 12098977 - 12099067
Alignment:
Q  63 ccttctggagggctttgag-ccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataa 152  Q
    |||||||||||||||| |  ||||  |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12098977 ccttctggagggcttttaaacccttgggaatattatgacggtccacagccccccaagcacgaggcttggaacaaggcgaagtgatgaataa 12099067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 52909672 - 52909782
Alignment:
Q  41 cccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    |||||||| ||||||||||| || ||||||||||| |||| ||| | |||||||   ||| |||||||||||| ||||||||||| ||||| |||||||     
T  52909672 cccttctagagggcgcctaagcctttctggagggcatttgtgcctttaggaatagattgacggtccacagccctccaagcacgagtcttgggacaaggcg 52909771  T
Q  140 aagtgatgaat 150  Q
    |||||||||||    
T  52909772 aagtgatgaat 52909782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 19911620 - 19911677
Alignment:
Q  82 ccctcaggaatattatgatggtccacagccccccaa-gcacgaggcttggaacaaggc 138  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  19911620 cccttaggaatattatgacggtccacagccccccaatgcacgaggcttggtacaaggc 19911677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 19454122 - 19454185
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    ||||||||  ||| |||||||||||||||||||||||| ||||| ||||||| || ||||||||    
T  19454122 aggaatatattgacggtccacagccccccaagcacgagtcttgggacaaggcgaattgatgaat 19454185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 546320 - 546374
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcct 58  Q
    ||||||||| ||||||| |||||||||||||| | ||| ||||||||||||||||    
T  546320 cggcgtcctgaggaggacgcgcctagacctccgaggtctcttctatagggcgcct 546374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 20194726 - 20194664
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaa 149  Q
    |||||||||||||   | |||||||||||||||||||| ||||| ||||||| ||||||||||    
T  20194726 aggaatattatgacttttcacagccccccaagcacgagtcttgggacaaggcgaagtgatgaa 20194664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 40608793 - 40608744
Alignment:
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    |||||||||||||||||||| ||| ||||| ||||||| |||||||||||    
T  40608793 ggtccacagccccccaagcatgagtcttgggacaaggcgaagtgatgaat 40608744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 24277058 - 24277133
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||| |||||| |||| || ||| ||||||||||||| ||||||||| ||||||||||| || ||||| |||||||    
T  24277058 cccttttggaggtctttaagtccttaggaatattatgacggtccacag-cccccaagcacaagtcttggcacaaggc 24277133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 25547854 - 25547695
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||| ||    
T  25547854 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagctcttaggaatattatgacgg 25547755  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttg 162  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  25547754 tccacagccctccaagcacgaggcttggaacaaggcgaagtgattaataatgtggatttg 25547695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 5009843 - 5010005
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  5009843 gacggcgccctgaggaggacgcgcctaggcctctaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 5009942  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||| |||||||||||||||||||||||||   ||||| | ||||||||||||||    
T  5009943 ggtccacagccctccaagcacgaggcttggaacaaggcgtggtgattattaatgtggatttgg 5010005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 25555246 - 25555088
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||  || | |||| ||||||| |||||| ||    
T  25555246 cggcgtcctaaggaggacgcgcctagacctctaaagtcccttctatagggcgcctaagcccttatggagggactttaacccttaggaatatttatgacgg 25555147  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggattt 161  Q
    |||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||    
T  25555146 tccacagccccccaagcacgaggcttggaacaaggagaagtgattaataaggtggattt 25555088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 25560125 - 25559967
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||  || | |||| ||||||| |||||| ||    
T  25560125 cggcgtcctaaggaggacgcgcctagacctctaaagtcccttctatagggcgcctaagcccttatggagggactttaacccttaggaatatttatgacgg 25560026  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggattt 161  Q
    |||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||    
T  25560025 tccacagccccccaagcacgaggcttggaacaaggagaagtgattaataaggtggattt 25559967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 18973134 - 18972974
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||| ||||||  ||||| |||||||||  |||||||||||||||||||||||||||||| ||||||||| | |||| ||||||| |||||| ||    
T  18973134 cggcgtcctgaggagggcgcgcccagacctccatcgtcccttctatagggcgcctaaacccttctagagggcttttaacccttaggaatatttatgacgg 18973035  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  18973034 tccacagcctcccaagcacgaggcttggaacaaggcgaagtgattaataacgtggatttgg 18972974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 18977649 - 18977489
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatatt-atgatgg 102  Q
    ||||||||| ||||||  ||||| |||||||||  |||||||||||||||||||||||||||||| || |||||| | |||| ||||||||| |||| ||    
T  18977649 cggcgtcctgaggagggcgcgcccagacctccatcgtcccttctatagggcgcctaaacccttctagaaggcttttaacccttaggaatatttatgacgg 18977550  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||    
T  18977549 tccacagccccccaagcacgaggcttcgaacaaggcgaagtgattaataacgtggatttgg 18977489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 26905456 - 26905591
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaata-ttatgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||| | |||| ||||||| |||||| ||    
T  26905456 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggaacctaagcccttctggagggcttttaacccttaggaatatttatgacgg 26905555  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggc 138  Q
    || |||||||||||||||||||||||||||||||||    
T  26905556 tcgacagccccccaagcacgaggcttggaacaaggc 26905591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 18972973 - 18972872
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatatt-atgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatt 160  Q
    ||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||    
T  18972973 cccttctggagggctttaa-cccttaggaatatttatgatggtccacagccccccaagcacgaggcttggaacaaggcgaagtgattaataacgtagatt 18972875  T
Q  161 tgg 163  Q
    |||    
T  18972874 tgg 18972872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 18977488 - 18977387
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatatt-atgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatt 160  Q
    ||||||||||||||||| | |||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  18977488 cccttctggagggctttaa-cccttaggaatatttatgacggtccacaaccccccaagcacgaggcttggaacaaggcgaagtgattaataacgtggatt 18977390  T
Q  161 tgg 163  Q
    |||    
T  18977389 tgg 18977387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 25502521 - 25502430
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttgagccctcaggaatatt 95  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| |||||||  || | |||| |||||||||    
T  25502521 cggcgtcctaaggaggacgcgcctagacctctaaagtcccttctatagggcgcctaagcccttatggagggactttaacccttaggaatatt 25502430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 5010006 - 5010100
Alignment:
Q  62 cccttctggagggctttga-gccctcaggaatattatgatggtccac-agccccccaagcacgaggcttggaacaaggcaaagtgatgaataatg 154  Q
    ||||||||||||||||| | ||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  5010006 cccttctggagggcttttaagcccttaggaatattatgacggtccaccagccctccaagcacgaggcttggaacaaggcgaagtgattaataatg 5010100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 18977386 - 18977310
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatatt-atgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||| | |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18977386 cccttctggagggctttaa-cccttaggaatatttatgacggtccacagccccccaagcacgaggcttggaacaaggc 18977310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 16077957 - 16078099
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctt-tgagccctcaggaatattatgatgg 102  Q
    ||||||||||||||||| |||||| |||||| | || |||||||  |||||| || ||||||||| ||| | || | |||| | ||||||||||||| ||    
T  16077957 cggcgtcctaaggaggacgcgcctggacctcaatag-cccttctggagggcgtctgaacccttctagagagtttctaagcctttaggaatattatgacgg 16078055  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    | |||||||||| ||||||||| ||||| ||||||| |||||||    
T  16078056 ttcacagccccctaagcacgagtcttgggacaaggcgaagtgat 16078099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 17526764 - 17526898
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctt-tgagccctcaggaatattatgatgg 102  Q
    |||||||||||||| || |||||| |||||  | || |||||||  |||||| |||| ||||||| |||||||| | |||| ||| ||||||||||| ||    
T  17526764 cggcgtcctaaggacgacgcgcctggaccttaatag-cccttctggagggcgtctaagcccttctagagggcttctaagccttcaagaatattatgacgg 17526862  T
Q  103 tccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||||| |  |||||||||||||    
T  17526863 tccacagccccccaagcacaaatcttggaacaaggc 17526898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 25555085 - 25554994
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatatt-atgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataa 152  Q
    |||||||||||||  || | |||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  25555085 cccttctggagggactttaacccttaggaatatttatgacggtcgacagccccccaagcacgaggcttggaacaaggcgaagtgattaataa 25554994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 25559964 - 25559873
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatatt-atgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataa 152  Q
    |||||||||||||  || | |||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  25559964 cccttctggagggactttaacccttaggaatatttatgacggtcgacagccccccaagcacgaggcttggaacaaggcgaagtgattaataa 25559873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 26908723 - 26908782
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaa 61  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  26908723 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctatagggcgcctaaa 26908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 26905742 - 26905786
Alignment:
Q  94 ttatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  26905742 ttatgacggtccacagccccccaagcacgaggcttggaacaaggc 26905786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 4 - 55
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  4 aggaatattatgacggtccacagcccaccaagcacgagtcttggaacaaggc 55  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 31711003 - 31710953
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||||||||||||||||||||| |||||||||| || ||||| |||||||    
T  31711003 aggaatattatgatggtccacagc-ccccaagcacaagtcttggtacaaggc 31710953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 44754062 - 44754011
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||||||||||  |||||||||||||||||||| || ||||| |||||||    
T  44754062 aggaatattatgacagtccacagccccccaagcacaagtcttggtacaaggc 44754011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 15699510 - 15699594
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||||||||||| ||| ||||| |   ||||  ||| |||||||| || |||||||||||| ||||| ||||||| |||||||    
T  15699510 cccttctggagggcattgtgcccttaattatatattgacggtccacaacctcccaagcacgagtcttgggacaaggcgaagtgat 15699594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 726253 - 726091
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggctttga-gccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| | ||||| |||||||||||||     
T  726253 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctataaggcgcctaaatccttctggagggcttttaagcccttaggaatattatgac 726154  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  726153 ggtccacagccctccaagcacgaggcttggaacaaggcgaagtgattaataatgtggatttgg 726091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 29724886 - 29724989
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgatgg 102  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||| ||    
T  29724886 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaagcccttctggagggcttttaagcccttaggaatattatgacgg 29724985  T
Q  103 tcca 106  Q
    ||||    
T  29724986 tcca 29724989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 106
Target Start/End: Complemental strand, 722680 - 722575
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  722680 gacggcgccctgaggaggacgcgcctaggcctccaaagtcccttctataaggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 722581  T
Q  101 ggtcca 106  Q
    ||||||    
T  722580 ggtcca 722575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 726090 - 726013
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatatt-atgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||| | |||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  726090 cccttctggagggcttttaaccctaaggaatatttatgacggtccacaaccccccaagcacgaggcttggaacaaggc 726013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 52388656 - 52388717
Alignment:
Q  89 gaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||| |||||    
T  52388656 gaatattatgacggtccacagccccccaagcacgagtcttgggacaaggcgaagtggtgaat 52388717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 22762892 - 22762831
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatga 148  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||| |||| || |||||||||    
T  22762892 aggaatattatgacggttcacagccccccaagcacgagtcttgggacaatgcgaagtgatga 22762831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 12327744 - 12327691
Alignment:
Q  93 attatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    ||||||| ||| |||||||||||||||||||| |||||||| |||| |||||||    
T  12327744 attatgacggttcacagccccccaagcacgagtcttggaacgaggcgaagtgat 12327691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 22762780 - 22762731
Alignment:
Q  95 tatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtg 144  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||| |||||    
T  22762780 tatgatggttcacagccccccaagcacgagtcttgggacaaggcgaagtg 22762731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 36539625 - 36539694
Alignment:
Q  81 gccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    ||||| ||||||||  |||  |||||||| |||||||||||||| ||||||| ||||| |||||||||||    
T  36539625 gcccttaggaatatattgacagtccacagtcccccaagcacgagccttggaataaggcgaagtgatgaat 36539694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 36539827 - 36539876
Alignment:
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    ||||||||| |||||||||||||| ||||||| ||||| |||||||||||    
T  36539827 ggtccacaggcccccaagcacgagccttggaataaggcgaagtgatgaat 36539876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 20503083 - 20503031
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    |||||||||||||| |||||||||||| ||||||| || ||||| ||||||||    
T  20503083 aggaatattatgattgtccacagcccctcaagcacaagccttggtacaaggca 20503031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 16483306 - 16483353
Alignment:
Q  99 atggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||||||||||||||||||||||| |||||  |||||| |||||||    
T  16483306 atggtccacagccccccaagcacgagtcttgggtcaaggcgaagtgat 16483353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 28924965 - 28925016
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||| |||| ||| |||||||||||| || |||||||||||||    
T  28924965 aggaatattatgacggtctacaaccccccaagcacaagtcttggaacaaggc 28925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 49022652 - 49022541
Alignment:
Q  41 cccttctatagggcgcctaaacccttctggagggctttgag-ccctcaggaatattatgatggtccacagccccccaagcacgaggc-ttggaacaaggc 138  Q
    |||||||  ||||||| |||||| |||| ||||||||| || |||| | ||||||  ||| ||||||||||||||||| |||||| | || | |||||||    
T  49022652 cccttctggagggcgcttaaacctttctagagggcttttaggcccttaagaatatattgacggtccacagccccccaatcacgagtcttttggacaaggc 49022553  T
Q  139 aaagtgatgaat 150  Q
     |||||||||||    
T  49022552 gaagtgatgaat 49022541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 12195557 - 12195484
Alignment:
Q  76 tttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    |||||||||| ||||||||  ||| ||||||| |||||| ||||||| | ||||| ||||||| |||||||||||    
T  12195557 tttgagcccttaggaatatattgacggtccactgccccc-aagcacgcgtcttgggacaaggcgaagtgatgaat 12195484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 10757120 - 10757069
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    ||||||||||||| |||||||||| |||||||||| || ||||| ||||||||    
T  10757120 aggaatattatgacggtccacagc-ccccaagcacaagtcttggtacaaggca 10757069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 10970291 - 10970240
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    ||||||||||||| |||||||||| |||||||||| || ||||| ||||||||    
T  10970291 aggaatattatgacggtccacagc-ccccaagcacaagtcttggtacaaggca 10970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 12417126 - 12417086
Alignment:
Q  97 tgatggtccacagccccccaagcacgaggcttggaacaagg 137  Q
    |||||||||||| ||||||||||||||| ||||| ||||||    
T  12417126 tgatggtccacaaccccccaagcacgagtcttgggacaagg 12417086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 245111 - 244949
Alignment:
Q  2 gacggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatattatgat 100  Q
    ||||||| ||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||     
T  245111 gacggcgccctgaggaggacgcgccgaggcctccaaagtcccttctatagggcgcctaaacccttctggagggcttttaagcccttaggaatattatgac 245012  T
Q  101 ggtccacagccccccaagcacgaggcttggaacaaggcaaagtgatgaataatgtggatttgg 163  Q
    |||||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  245011 ggtccacagccctccaagcacgaggcttggaacaaggcgtggtgattaataatgtggatttgg 244949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 244948 - 244872
Alignment:
Q  62 cccttctggagggctttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  244948 cccttctggagggcttttaaccctaaggaatattatgacggtccacagccccccaagcacgaggcttggtacaaggc 244872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 4871 - 4779
Alignment:
Q  4 cggcgtcctaaggaggatgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctggagggc-tttgagccctcaggaatatt 95  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||||    
T  4871 cggcgtcctgaggaggacgcgcctagacctccaaagtcccttctatagggcgcctaaacccttctagagggcttttaagcccttaggaatatt 4779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 253968 - 254034
Alignment:
Q  80 agccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||| | |||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  253968 agcccttaagaatataatgatggtccataaccccccaagcacgaggcttgggacaaggcaaagtgat 254034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 260574 - 260640
Alignment:
Q  80 agccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||| | |||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  260574 agcccttaagaatataatgatggtccataaccccccaagcacgaggcttgggacaaggcaaagtgat 260640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 133740 - 133791
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||| |||||||||||| ||||||||| | |||||||||||||    
T  133740 aggaatattatgacggtccacagcccaccaagcacgggtcttggaacaaggc 133791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 138269 - 138320
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    ||||||||||||| |||||||||||| ||||||||| | |||||||||||||    
T  138269 aggaatattatgacggtccacagcccaccaagcacgggtcttggaacaaggc 138320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 12210 - 12100
Alignment:
Q  42 ccttctatagggcgcctaaacccttct-ggagggc-tttgagccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggca 139  Q
    ||||||| ||||||||||| ||||| | ||||||| |||||||||| ||||||||  ||| | ||||||  |||| ||||||||| ||||| |||  |||    
T  12210 ccttctagagggcgcctaagccctttttggagggcatttgagcccttaggaatatattgacgatccacaatccccgaagcacgagtcttgggacagagca 12111  T
Q  140 aagtgatgaat 150  Q
    |||||||||||    
T  12110 aagtgatgaat 12100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 49622 - 49576
Alignment:
Q  92 tattatgatggtccacagccccccaagcacgaggcttggaacaaggc 138  Q
    |||||||| |||||||||||| ||||||||||| |||||||||||||    
T  49622 tattatgacggtccacagcccaccaagcacgagtcttggaacaaggc 49576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 84863 - 84797
Alignment:
Q  80 agccctcaggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtgat 146  Q
    |||||| |||||||| |||| |||||||||||  ||||| ||||| ||||| ||||||| |||||||    
T  84863 agcccttaggaatataatgacggtccacagccttccaagtacgagtcttgggacaaggcgaagtgat 84797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 26038 - 26095
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaaggcaaagtg 144  Q
    ||||||||||||| ||| |||||||||| ||||||||| ||||| | ||||| |||||    
T  26038 aggaatattatgacggttcacagcccccaaagcacgagccttgggagaaggcgaagtg 26095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 6324 - 6280
Alignment:
Q  106 acagccccccaagcacgaggcttggaacaaggcaaagtgatgaat 150  Q
    |||||||||||||||||||  |||| ||||||| |||||||||||    
T  6324 acagccccccaagcacgagctttgggacaaggcgaagtgatgaat 6280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 30205 - 30157
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaa 135  Q
    ||||||||||||| |||| ||||||| ||||| ||||| ||||||||||    
T  30205 aggaatattatgacggtctacagcccaccaagtacgagtcttggaacaa 30157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 35512 - 35464
Alignment:
Q  87 aggaatattatgatggtccacagccccccaagcacgaggcttggaacaa 135  Q
    ||||||||||||| |||| ||||||| ||||| ||||| ||||||||||    
T  35512 aggaatattatgacggtctacagcccaccaagtacgagtcttggaacaa 35464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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