View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20817_low_33 (Length: 235)

Name: NF20817_low_33
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20817_low_33
NF20817_low_33
[»] chr3 (15 HSPs)
chr3 (30-221)||(28000410-28000601)
chr3 (33-221)||(28179413-28179601)
chr3 (30-221)||(28470736-28470927)
chr3 (41-221)||(28482978-28483159)
chr3 (41-221)||(28511792-28511973)
chr3 (45-163)||(17747149-17747267)
chr3 (45-163)||(19048469-19048587)
chr3 (97-163)||(27462659-27462725)
chr3 (85-163)||(11410410-11410487)
chr3 (74-159)||(28081333-28081418)
chr3 (94-163)||(27911443-27911512)
chr3 (67-156)||(26627075-26627160)
chr3 (30-83)||(28049605-28049658)
chr3 (30-83)||(28158109-28158162)
chr3 (30-83)||(28145403-28145456)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 28000601 - 28000410
Alignment:
Q  30 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  28000601 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatggagataaagatggataccttgatgattgtatcgtccacagatct 28000502  T
Q  130 tgttactgaatgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||| |||||||||||||||||||||||||||||||    
T  28000501 tgttactgaatgatgagttatgaaatcaccaataaactgcgggcatttttcaacttcaagtatttccaattgtggaaatgttgtgtgatatt 28000410  T

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Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 28179601 - 28179413
Alignment:
Q  33 atatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||    
T  28179601 atatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatgaataccttgatgattgtaccgtccaccgatcttgt 28179502  T
Q  133 tactgaatgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 221  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||||||||||| ||||||||||    
T  28179501 tattgaatgatgagttatgaaatcaccaataaactgcgggcattcttcaactacaagtctttccaattgtggaaatgtcgtgtgatatt 28179413  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 28470736 - 28470927
Alignment:
Q  30 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatct 129  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||    
T  28470736 aatatatgtttacttaaaatcatcaagtttagatttacaaacaacaaagatatatagaaataaggatgaataccttgatgattgtatcgtccacagatct 28470835  T
Q  130 tgttactgaatgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 221  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||    
T  28470836 tgttactgaatgatgagttaagaaatcaccaataaattgcgggcattcttcaactacaagttttttcaattgtggaaatgttgtgtgatatt 28470927  T

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Target: chr3; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 28482978 - 28483159
Alignment:
Q  41 acttaaaatcatcaagtttagattttcaaa-caacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaa 139  Q
    ||||||||| ||||||||||||||| |||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  28482978 acttaaaattatcaagtttagatttacaaaacaacaaatatatatagaaataaggatgaataccttgatgattgtatcgtccacagatcttgttactgaa 28483077  T
Q  140 tgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 221  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||    
T  28483078 tgatgagttaagaaatcaccaataaattgcgggcattcttcaactacaagttttttcaattgtggaaatgttgtgtgatatt 28483159  T

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Target: chr3; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 28511792 - 28511973
Alignment:
Q  41 acttaaaatcatcaagtttagattttcaaa-caacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaa 139  Q
    ||||||||| ||||||||||||||| |||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  28511792 acttaaaattatcaagtttagatttacaaaacaacaaatatatatagaaataaggatgaataccttgatgattgtatcgtccacagatcttgttactgaa 28511891  T
Q  140 tgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 221  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||    
T  28511892 tgatgagttaagaaatcaccaataaattgcgggcattcttcaactacaagttttttcaattgtggaaatgttgtgtgatatt 28511973  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 17747149 - 17747267
Alignment:
Q  45 aaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatg 144  Q
    ||||| ||||||||||||    ||||||||||||||||||||| |||| ||||||||||||||||||||||| || || | ||||||||| |||||||||    
T  17747149 aaaattatcaagtttagaaacacaaacaacaaagatatatagaaataaggatggataccttgatgattgtattgttcagagatcttgttaatgaatgatg 17747248  T
Q  145 agttatgaaatcaccaata 163  Q
    ||||||| |||||||||||    
T  17747249 agttatgcaatcaccaata 17747267  T

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Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 19048469 - 19048587
Alignment:
Q  45 aaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatg 144  Q
    ||||| ||||||||||||    ||||||||||||||||||||| |||| ||||||||||||||||||||||| || || | ||||||||| |||||||||    
T  19048469 aaaattatcaagtttagaaacacaaacaacaaagatatatagaaataaggatggataccttgatgattgtattgttcagagatcttgttaatgaatgatg 19048568  T
Q  145 agttatgaaatcaccaata 163  Q
    ||||||| |||||||||||    
T  19048569 agttatgcaatcaccaata 19048587  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 27462659 - 27462725
Alignment:
Q  97 ggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcaccaata 163  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  27462659 ggataccttgatgattgtattgtcgacaaatcttgttactgaatgatgagttatgaaatcactaata 27462725  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 11410487 - 11410410
Alignment:
Q  85 agagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcaccaata 163  Q
    ||||||||||||| ||||||||||| |||||  ||| ||| ||||||| |||||||||||||| |||||||||||||||    
T  11410487 agagataaagatg-ataccttgatggttgtacggtcgacagatcttgtaactgaatgatgagtcatgaaatcaccaata 11410410  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 28081418 - 28081333
Alignment:
Q  74 caaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcacc 159  Q
    ||||||||||||||  ||  |||| |||||| ||||||| |||| |||||| ||||  ||||||||||||||||||||||||||||    
T  28081418 caaagatatatagaattagggatgaatacctcgatgattctatcatccacagatctaattactgaatgatgagttatgaaatcacc 28081333  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 27911512 - 27911443
Alignment:
Q  94 gatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcaccaata 163  Q
    ||||||||||||| |||||| | ||||||||||||||||| | ||||||||  || ||||||||||||||    
T  27911512 gatggataccttggtgattggaccgtccacaaatcttgttgcagaatgatgcattgtgaaatcaccaata 27911443  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 26627160 - 26627075
Alignment:
Q  67 caaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatc 156  Q
    ||||||||||||||||||   || ||||| ||||||||| ||||||||| |||||| | ||||||||  ||||||| |||||||||||||    
T  26627160 caaacaacaaagatatat---ga-aaagagggatacctttatgattgtaccgtccatagatcttgttgttgaatgacgagttatgaaatc 26627075  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28049658 - 28049605
Alignment:
Q  30 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatata 83  Q
    |||||||  ||||||||||||||||||||||||||  |||| ||||||||||||    
T  28049658 aatatataatgacttaaaatcatcaagtttagattcacaaataacaaagatata 28049605  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28158162 - 28158109
Alignment:
Q  30 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatata 83  Q
    |||||||| ||||||||||||||||||||||||||  | || ||||||||||||    
T  28158162 aatatatgctgacttaaaatcatcaagtttagattcacgaataacaaagatata 28158109  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28145456 - 28145403
Alignment:
Q  30 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatata 83  Q
    |||||||| ||||||||||| || |||||||||||  |||| ||||||||||||    
T  28145456 aatatatgatgacttaaaattatgaagtttagattcacaaataacaaagatata 28145403  T

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