View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_5 (Length: 587)
Name: NF20817_low_5
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 3 - 569
Target Start/End: Complemental strand, 63212 - 62631
Alignment:
| Q |
3 |
ttttttgtctatctctaatgttctctttcatgctttcatattctttacatgtgttctaatggcattgaaatttcttctggagttgaaaaacaaaaa--gt |
100 |
Q |
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| T |
63212 |
ttttttgtctatctctactgttctctttcatgctttcatattctttacatgtgttctaatggcattgaaatttcttctggaattgaaaaacaataatagt |
63113 |
T |
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| Q |
101 |
ttttgacgcccgtttgaaatcaac------------tttggatcccaattccttcatcctcatcagaagactgcctcataaggagattgcagaaattata |
188 |
Q |
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| T |
63112 |
ttttgacgcccgtttgaaatcaacatcgtcatcaactttggatcccaattccttcatcctcatcagaagactgcctcataaggagattgcagaaattata |
63013 |
T |
|
| Q |
189 |
attactatcatttatcagacattatttggtagattcaaaataataatgttggctaacaccnnnnnnnnnnnnnnnntaacaatgttgggcaataatttca |
288 |
Q |
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| T |
63012 |
attactatcatttatcagacattatttggtagattcaaaataataatgttggctaacaccaaaaaataaaataaaataacaatgttggggaataatttca |
62913 |
T |
|
| Q |
289 |
agatcgcagggagaaaggaatggaaaaactaa-tgatttgaacaacaaaatcttagatgtcagagacgtagcttttgtttttgtagaataagctcaaatc |
387 |
Q |
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| T |
62912 |
agatcgcagggagaaaggaatggaaaaactaaatgatttgaacaacaaaatcttagatgtcagagacgtagcttttgtttttgtagaataagctcaaatc |
62813 |
T |
|
| Q |
388 |
tctgggtcaatgaattttgaattggataatcaataacactttctcccacaccaactataacacgtagaacccacttcaattttacttttacttagcaaga |
487 |
Q |
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| T |
62812 |
tctgggtcaatgaattttgaattggataatcaataacactttctcccacaccaactataacacgtagaacccacttcaattttacttttacttagcaaga |
62713 |
T |
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| Q |
488 |
agagtggagagggggaagagttcacgcaacacgacaatggagttgtgagccaaactgtgctgttaacatttgtgggttctac |
569 |
Q |
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| T |
62712 |
agagtggagagggggaagagttcacgcaacacgacaatggagttgtgagccaaactgtgctgttaacatttgtgggttctac |
62631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 43540490 - 43540535
Alignment:
| Q |
484 |
aagaagagtggagagggggaagagttcacgcaacacgacaatggag |
529 |
Q |
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| T |
43540490 |
aagaagagtggagagggggaagagttcacgcagcacgacaatggag |
43540535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 546
Target Start/End: Original strand, 35110468 - 35110506
Alignment:
| Q |
508 |
ttcacgcaacacgacaatggagttgtgagccaaactgtg |
546 |
Q |
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| T |
35110468 |
ttcacgcagcacgacaatggagttgtgagccaaattgtg |
35110506 |
T |
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