View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20817_low_6 (Length: 531)

Name: NF20817_low_6
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20817_low_6
NF20817_low_6
[»] chr3 (21 HSPs)
chr3 (15-199)||(28001690-28001871)
chr3 (17-83)||(17746866-17746932)
chr3 (17-83)||(19048186-19048252)
chr3 (434-519)||(28147095-28147180)
chr3 (245-363)||(28183037-28183158)
chr3 (30-83)||(28183337-28183390)
chr3 (15-83)||(27914973-27915041)
chr3 (236-338)||(28052722-28052826)
chr3 (236-338)||(28063147-28063251)
chr3 (462-519)||(28182884-28182941)
chr3 (452-519)||(28521252-28521319)
chr3 (30-83)||(28053018-28053071)
chr3 (30-83)||(28063443-28063496)
chr3 (112-189)||(28052919-28052998)
chr3 (112-189)||(28063344-28063423)
chr3 (476-519)||(28052311-28052354)
chr3 (197-232)||(28001612-28001647)
chr3 (22-79)||(27457842-27457899)
chr3 (434-491)||(28131575-28131632)
chr3 (434-486)||(28052450-28052502)
chr3 (434-486)||(28062875-28062927)
[»] chr1 (1 HSPs)
chr1 (205-315)||(34416197-34416312)
[»] scaffold0257 (1 HSPs)
scaffold0257 (471-519)||(16812-16860)
[»] chr5 (1 HSPs)
chr5 (197-283)||(27906820-27906907)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 28001871 - 28001690
Alignment:
Q  15 tataatggagaccaa-ttgatatgctcaaccgatatcaagaaaaacataattgtaat-----gaagtttaggaataagtnnnnnnnnnnnnnnnnnngtg 108  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||     |||||||||||||||||                   ||    
T  28001871 tataatggagaccaaattgatatgctcaactgatatcaagaaaaacataattgtaatataatgaagtttaggaataagtaaaaaaaaaa---------tg 28001781  T
Q  109 ttatattcttaacttgatcactatataattgtaatgaatctaggaaaactaattatactttttgtttatggtgatgatatttttgttacat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  28001780 ttatattcttaacttgatcactatataattgtaatgaatctaggaaaactaattatactttttgtttatgttgatgatattgttgttacat 28001690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 17746866 - 17746932
Alignment:
Q  17 taatggagaccaattgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttaggaat 83  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  17746866 taatggagactaattgatatgctcaaccgatgtcaagagaaacataattgtaatgaagtttaagaat 17746932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 19048186 - 19048252
Alignment:
Q  17 taatggagaccaattgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttaggaat 83  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  19048186 taatggagactaattgatatgctcaaccgatgtcaagagaaacataattgtaatgaagtttaagaat 19048252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 434 - 519
Target Start/End: Complemental strand, 28147180 - 28147095
Alignment:
Q  434 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaa 519  Q
    |||||||| |||| |||| | | || |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28147180 aatgtaacaaaaagaaagcactacagtatttaattaaattaatattgttatttaattttcaacactccaacctttttgtttttcaa 28147095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 363
Target Start/End: Complemental strand, 28183158 - 28183037
Alignment:
Q  245 aattgaggtagcttactcaaagaaaggaatttttatctc----agaaaatatctgtttgaccttttgcaggaaacataaaaacttggaagcaaacctaca 340  Q
    |||| |||||| | |||||||||||||||||||||||||    ||||||||  ||||||||||||||| ||||||| ||||| |||||||||||||||      
T  28183158 aattaaggtagttcactcaaagaaaggaatttttatctcttgtagaaaatacttgtttgaccttttgctggaaacagaaaaaattggaagcaaacctaag 28183059  T
Q  341 actatttttcagttaaattaata 363  Q
    | |  ||||||||||||||||||    
T  28183058 agt-gttttcagttaaattaata 28183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28183390 - 28183337
Alignment:
Q  30 ttgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttaggaat 83  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28183390 ttgatatgctcaaccgatatcaagagaaacataattgtaatgaagtttaggaat 28183337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 27915041 - 27914973
Alignment:
Q  15 tataatggagaccaattgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttaggaat 83  Q
    ||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  27915041 tataatggagaccaattaatatgttcaaccgatttcaagagaaacataattgtaatgaagtctaggaat 27914973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 28052826 - 28052722
Alignment:
Q  236 atttctcaaaattgaggtagcttactcaaagaaaggaatttttatctc--agaaaatatctgtttgaccttttgcaggaaacataaaaacttggaagcaa 333  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||    ||||||| ||||||||||||||  ||||| | |||||||| |||||||    
T  28052826 atttcttaaaattgaggtaactcactcaaagaaaggaatttgtatctcgtgaaaaatatgtgtttgaccttttggtggaaaaagaaaaactttgaagcaa 28052727  T
Q  334 accta 338  Q
    |||||    
T  28052726 accta 28052722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 28063251 - 28063147
Alignment:
Q  236 atttctcaaaattgaggtagcttactcaaagaaaggaatttttatctc--agaaaatatctgtttgaccttttgcaggaaacataaaaacttggaagcaa 333  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||    ||||||| ||||||||||||||  ||||| | |||||||| |||||||    
T  28063251 atttcttaaaattgaggtaactcactcaaagaaaggaatttgtatctcgtgaaaaatatgtgtttgaccttttggtggaaaaagaaaaactttgaagcaa 28063152  T
Q  334 accta 338  Q
    |||||    
T  28063151 accta 28063147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 462 - 519
Target Start/End: Complemental strand, 28182941 - 28182884
Alignment:
Q  462 tttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaa 519  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28182941 tttaattaaattaatattgttatttaattttcaacaccccaacccttttgtttttcaa 28182884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 452 - 519
Target Start/End: Original strand, 28521252 - 28521319
Alignment:
Q  452 tattgcattatttaatttgattaatattgttatttaattttcaacactccaacccttttgtttttcaa 519  Q
    |||| ||||||||||||  ||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  28521252 tattacattatttaattaaattaatattgtcatttacttttcaacactccaacacttttgtttttcaa 28521319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28053071 - 28053018
Alignment:
Q  30 ttgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttaggaat 83  Q
    |||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  28053071 ttgatatgctcaaccgatatcacgagaaacataattgtaatgaagcttaggaat 28053018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28063496 - 28063443
Alignment:
Q  30 ttgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttaggaat 83  Q
    |||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  28063496 ttgatatgctcaaccgatatcacgagaaacataattgtaatgaagcttaggaat 28063443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 28052998 - 28052919
Alignment:
Q  112 tattcttaacttgatc--actatataattgtaatgaatctaggaaaactaattatactttttgtttatggtgatgatatt 189  Q
    |||||||||||||| |  ||| |||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  28052998 tattcttaacttgagcgcactttatatttgtaatgaatctagaaaaactaattgaactttttgtttatgttgatgatatt 28052919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 28063423 - 28063344
Alignment:
Q  112 tattcttaacttgatc--actatataattgtaatgaatctaggaaaactaattatactttttgtttatggtgatgatatt 189  Q
    |||||||||||||| |  ||| |||| ||||||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  28063423 tattcttaacttgagcgcactttatatttgtaatgaatctagaaaaactaattgaactttttgtttatgttgatgatatt 28063344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 519
Target Start/End: Complemental strand, 28052354 - 28052311
Alignment:
Q  476 tattgttatttaattttcaacactccaacccttttgtttttcaa 519  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  28052354 tattgttatttaattttcgacactccaacccttttgtttttcaa 28052311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 28001647 - 28001612
Alignment:
Q  197 cattagagtttgaaatgaaggaccttgaacgactca 232  Q
    ||||||||||||||||||||||||||||||||||||    
T  28001647 cattagagtttgaaatgaaggaccttgaacgactca 28001612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 27457842 - 27457899
Alignment:
Q  22 gagaccaattgatatgctcaaccgatatcaagaaaaacataattgtaatgaagtttag 79  Q
    |||||||||  ||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  27457842 gagaccaatgaatatgctcaaccgatgtcaagagtaacataattgtagtgaagtttag 27457899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 28131632 - 28131575
Alignment:
Q  434 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttatttaattt 491  Q
    ||||||||||||| |||||| | ||||||||||||  ||||| |||| ||||||||||    
T  28131632 aatgtaaccaaaagaaagtactacattatttaattaaattaacattgatatttaattt 28131575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 28052502 - 28052450
Alignment:
Q  434 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttattt 486  Q
    |||| |||||||| |||||| | ||||||||||||  ||||||||||||||||    
T  28052502 aatgcaaccaaaagaaagtagtacattatttaattaaattaatattgttattt 28052450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 28062927 - 28062875
Alignment:
Q  434 aatgtaaccaaaataaagtattgcattatttaatttgattaatattgttattt 486  Q
    |||| |||||||| |||||| | ||||||||||||  ||||||||||||||||    
T  28062927 aatgcaaccaaaagaaagtagtacattatttaattaaattaatattgttattt 28062875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 315
Target Start/End: Complemental strand, 34416312 - 34416197
Alignment:
Q  205 tttgaaatgaaggaccttgaacgactcaagtatttc-tcaaaattgaggtagcttactcaaagaaaggaatttttatctc----agaaaatatctgtttg 299  Q
    ||||||||||| ||| |||||| ||||||||||||| | | ||||||||||||| ||||||| |||||||| | ||||||    ||||| ||| ||||||    
T  34416312 tttgaaatgaatgacattgaacaactcaagtatttctttagaattgaggtagctcactcaaataaaggaatatgtatctctcatagaaagtatgtgtttg 34416213  T
Q  300 accttttgcaggaaac 315  Q
    ||||||||| ||||||    
T  34416212 accttttgccggaaac 34416197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 16860 - 16812
Alignment:
Q  471 attaatattgttatttaattttcaacactccaacccttttgtttttcaa 519  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  16860 attaatattgttatttaattttgaacactccaacccttctgtgtttcaa 16812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 27906907 - 27906820
Alignment:
Q  197 cattagagtttgaaatgaaggaccttgaacgactcaagtatttctcaa-aattgaggtagcttactcaaagaaaggaatttttatctc 283  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||    |||||||||||| ||||||||| ||| ||||||| ||||    
T  27906907 cattagagtttgagatgaaggaccttgagcaactcgagtatttcttgggaattgaggtagcctactcaaagcaagaaatttttctctc 27906820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University