View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_8 (Length: 483)
Name: NF20817_low_8
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 43255533 - 43255093
Alignment:
| Q |
1 |
ctttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaac |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255533 |
ctttcttgtcttagcatcctgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaac |
43255434 |
T |
|
| Q |
101 |
ttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggttccttttgttacttgcttgcccatcccaatccaaattccatcctcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43255433 |
ttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggttccttttgttacttgcttgcccctcccaatccaaattccatcctcctt |
43255334 |
T |
|
| Q |
201 |
acc----atgtcaccaccatcacatcttttgctgccaccgatccagatccacaaaacctcttcatttacatgatctttctcttttgctcgaaacacaatc |
296 |
Q |
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||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255333 |
accatatatgtcaccaccatcacatcttttgcttgcccc----------------acctcttcatttacatgatctttctcttttgctcgaaacacaatc |
43255250 |
T |
|
| Q |
297 |
tctgtctcgactgagcgtcccccaccgaaaccaccacctcatgtgaaacagatcctccactttggtctaccggatctgccatcgccgtctattttgaaac |
396 |
Q |
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||||||||||| || || | || || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255249 |
tctgtctcgaccga------ccgagcg--tcccccaccttatgtgaaacagatcctccactttggtctaccggatctgccatcgccgtctattttgaaac |
43255158 |
T |
|
| Q |
397 |
ttgtctcggcatcctatccaccatcgctgcccagccttgtacggccgccgcgaaagcctcccgaa |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43255157 |
ttgtctcggcatcctatccaccatcgctgcccagccttgtatggccgccgcgaaagcctcccgaa |
43255093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43258799 - 43258688
Alignment:
| Q |
1 |
ctttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaac |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43258799 |
ctttcttgtcttagcatcttgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaaatattcagcatctttgtgtgttaac |
43258700 |
T |
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| Q |
101 |
ttctttgttgca |
112 |
Q |
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|||||||||||| |
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| T |
43258699 |
ttctttgttgca |
43258688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
50 |
agaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
112 |
Q |
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||||||||||| |||||||||||||| |||| | |||| |||||||||||||||||||||| |
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| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatct--gtgtgttaacttctttgttgca |
43226006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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