View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20817_low_9 (Length: 468)
Name: NF20817_low_9
Description: NF20817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20817_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 34097193 - 34097646
Alignment:
| Q |
1 |
ggttatcctagtgaaagttgaaagcgggattcatggaactttatttgtgatttttcgcaaaatatttctatttcgtggtgcatcattagggattttaatg |
100 |
Q |
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| T |
34097193 |
ggttatcctagtgaaagttgaaagcgggattcatggaactttatttgtgatttctcgcaaaatatttatatttcgtggtgcatcattagggattttaatg |
34097292 |
T |
|
| Q |
101 |
atatattggatgctcatgaggaaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacaggcggtattagattatgggttgtagttat |
200 |
Q |
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| T |
34097293 |
atatattggatgctcatgaggaaaaaaggaagaattaagaggcctaattggtttattaacgaattaagacatgcgatattagattatgggtt---gttat |
34097389 |
T |
|
| Q |
201 |
atgtccaaatggaaggaaggctaccattttacctggtttcaaagtccaggcaac-cactccttgtgttttttagaagagattagagactatgctcttact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |
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| T |
34097390 |
atgtccaaatggaaggaaggctaccattttacctggtttcaaagtccaggcaacattctccttgtgttttttagaagagatt--agactatgctcttagt |
34097487 |
T |
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| Q |
300 |
agtgaaatgtggtttcaaattttttccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatgtttatcccattgtgaggccttgcag |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
34097488 |
agtgaaatgtggtttcaaatttttcccaatgctaagttgctcctgcatattgtcatcatcccatcctccttgatatttatcccattgtgagaccttgcag |
34097587 |
T |
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| Q |
400 |
aactcgatgtacattcaaattcaaaaacacatggtgtgtggagcctggcttgaatgatg |
458 |
Q |
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| T |
34097588 |
aactcgatgtacattcaaattcaaaaacacatggtgtgtggagcctggcttgaatgatg |
34097646 |
T |
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