View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20818_high_10 (Length: 313)
Name: NF20818_high_10
Description: NF20818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20818_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 17746860 - 17747074
Alignment:
| Q |
14 |
ccttagctaactcatagacaatttcatttgtttgtctctgtgcaaactcaacaccaaagttttcatacaattaactaaacaaaattttacaaccatgtat |
113 |
Q |
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| T |
17746860 |
ccttagctaactcatggacaatttcatttgtttgtctatgtacaaactcaacaccaaagttttcagacaattaactaaacaaaattttacaaccatgtat |
17746959 |
T |
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| Q |
114 |
aatacccccaattctgctgcatcatgcttggaagcaactctttcaaccgctttctttgaatcaagttcaaaatacataggtcataaacttaactcttgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17746960 |
aatacccccaattctgctgcatcatgcttggaagcaactctttcaaccgctttctttgaatcaagttcaaaatacataggtcataaacttaactcttgaa |
17747059 |
T |
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| Q |
214 |
ctcattgaagagcca |
228 |
Q |
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| T |
17747060 |
cccattgaagagcca |
17747074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 5714801 - 5714537
Alignment:
| Q |
14 |
ccttagctaactcatagacaatttcatttgtttgtctctgtgcaaactcaacaccaaagttttcatacaattaactaaacaaaattttacaaccatgtat |
113 |
Q |
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|||||||||||||||| ||| | ||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5714801 |
ccttagctaactcataatcaactgcatttatttgtctctgtacaaactcaacactatagttttcatacaattaactaaacaaaattttacaaccatctat |
5714702 |
T |
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| Q |
114 |
aatacccccaattctgctgcatcatgcttggaagcaactctttcaaccgctttctttgaatcaagttcaaaatacataggtcataaacttaactcttgaa |
213 |
Q |
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| T |
5714701 |
actacccccaattctgctgcatcatgcttggaagcaactctatcaaccgctttctttgaatcaagttcaaaatacataggtcataagcttaacttatgaa |
5714602 |
T |
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| Q |
214 |
ctcattgaagagccaacaacaagttgttattattattaactatccactgaacttatttaacgaca |
278 |
Q |
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| T |
5714601 |
cccattgaagagccaacaacaggttgttatgtttattaactatccactgaacttatttaacgaca |
5714537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 25585946 - 25586012
Alignment:
| Q |
14 |
ccttagctaactcatagacaatttcatttgtttgtctctgtgcaaactcaacaccaaagttttcata |
80 |
Q |
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|||| ||||||| || ||||| ||||||| ||||||| || |||||||||||||| |||||||||| |
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| T |
25585946 |
cctttgctaacttatggacaacctcatttgcttgtctccgtacaaactcaacaccagagttttcata |
25586012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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