View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20818_high_7 (Length: 343)
Name: NF20818_high_7
Description: NF20818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20818_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 20154561 - 20154256
Alignment:
| Q |
30 |
aagattgtccaagagatgcatttatctgatataatgcaacttgggggaaaagtatggtttttgaggtaattctctaaaggctcttgaagcatgtgaagtg |
129 |
Q |
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| T |
20154561 |
aagattgtccaagagatgcatttatctgatataatgcaacttggtggaaaagtatggtttttgaggtaattctctaaaggctcttgaagcatgtgaagtg |
20154462 |
T |
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| Q |
130 |
cattgtagaagtttctgagtaggtttcttgatggtaaagcgtcgagattttcacagtctaatggaagttgaacttgttgacatggaaatgggatttcaag |
229 |
Q |
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| T |
20154461 |
cattgtagaagtttctgagtaggtttcttgatggtaaagcgtcgagattttcgcagtctaatggaagttgaacttgttgacatggaaatgggatttcaag |
20154362 |
T |
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| Q |
230 |
gaggtgaagttgaaggcctaattttgttgctctttgaattgtgttgtgaaatcttgaagtgttttgaggtgttgtgactagagtcaccatcacccttttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20154361 |
gaggtgaagttgaaggcctaattttgttgctctttgaattatgttgtgaaatcttgaagtgttttgaggtgttgtgactagagtcaccatcacacttttc |
20154262 |
T |
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| Q |
330 |
tctgct |
335 |
Q |
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|||||| |
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| T |
20154261 |
tctgct |
20154256 |
T |
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