View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20818_high_8 (Length: 327)
Name: NF20818_high_8
Description: NF20818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20818_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 122 - 325
Target Start/End: Original strand, 1786596 - 1786799
Alignment:
| Q |
122 |
ccaaactacgttacctaatctcacaacagaaccgaatccaaagaagctgaaactcacagaaaacgcaatgatcatataaaatagcacgcactcagtcaat |
221 |
Q |
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| T |
1786596 |
ccaaactacgttacctaatctcacaacagaaccgaatccaaagaagctgaaactcacagaaaacgcaatgatcatataaaatcgcacgcactcagtcaat |
1786695 |
T |
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| Q |
222 |
atcaaacgatttcacagtccaaatcaagaaagtgtaaaaaacgaacaaacggaaattaaattgaattgtaacggaacaacgaactttcaactctgctcga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
1786696 |
atcaaacgatttcacagtccaaatcaagaaagtgtaaaaaacgaacaaacggaaattaaattgaattgtaacggaacaacgaactttcaactcttcacga |
1786795 |
T |
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| Q |
322 |
cgga |
325 |
Q |
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|||| |
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| T |
1786796 |
cgga |
1786799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 1786504 - 1786560
Alignment:
| Q |
21 |
acatcatcacatcagaatatgcaaaacttcaataaaaattcaaccaaaaacagcttc |
77 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1786504 |
acatcaacacatcagaatatgcaaaacttcaataaaaattcaaccaaaaacagcttc |
1786560 |
T |
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