View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20819_high_4 (Length: 319)
Name: NF20819_high_4
Description: NF20819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20819_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 10848172 - 10848452
Alignment:
| Q |
10 |
agatgaagctgaggataatctaggaataaccgaaagtaatgttgcagcttggcttcagaaagtggataaaactagaactgaaacggaagagtttcaagat |
109 |
Q |
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| T |
10848172 |
agatgaagctgaggataatctaggaataaccgaaagtaatgttgcagcttggcttcagaaagtggataaaactagaactgaaacggaggagtttcaagat |
10848271 |
T |
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| Q |
110 |
gatgaaggccacatgaagacaaggttttccagtggtttatttcattacttgaggaacagacatagactagggagaaaagcaaggaagatggcagtggatg |
209 |
Q |
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| T |
10848272 |
gatgaaggccacacgaagacaaggttttccagtggtttatttcattacctgaggaacagacatagactagggagaaaagcaaagaagatggcagtggatg |
10848371 |
T |
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| Q |
210 |
tcaagttattaacagacgagtcgaagtttgatggagtttcctatcagcaaaagccaacatctatgcatgctgctttgttta |
290 |
Q |
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| T |
10848372 |
tcaagttattaatagacgagtcgaagtttgatggagtttcctatcagcaaaagccaacatctatgcatgctgctttgttta |
10848452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 10879568 - 10879845
Alignment:
| Q |
10 |
agatgaagctgaggataatctaggaataaccgaaagtaatgttgcagcttggcttcagaaagtggataaaactagaactgaaacggaagagtttcaagat |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10879568 |
agataaagctgaggataatctaggaataaccgaaagtaatgttgcaacttggcttcagaaagtggataaaactagaactgaaacggagaagtttcaagat |
10879667 |
T |
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| Q |
110 |
gatgaaggccacatgaagacaaggttttccagtggtttatttcattacttgaggaacagacatagactagggagaaaagcaaggaagatggcagtggatg |
209 |
Q |
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| T |
10879668 |
gataaaggccatgcgaagacaaggttttccagtggtttatttcattacttgaggaacagacatagactagggagaaaagcaaagaagatggcagtggatg |
10879767 |
T |
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| Q |
210 |
tcaagttattaacagacgagtcgaagtttgatggagtttcctatcagcaaaagccaacatctatgcatgctgctttgttta |
290 |
Q |
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| T |
10879768 |
tcaagttattaatagacga---gaagtttgatggagtttcctatcagcaaaagccaacatctatgcatgttgctttgttta |
10879845 |
T |
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