View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20819_high_6 (Length: 310)
Name: NF20819_high_6
Description: NF20819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20819_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 12814421 - 12814145
Alignment:
| Q |
21 |
acatcatcaggcatagctgcattgttaataccaggggggaggacaacacattcgaggtttggctttcctctactaataaatgaatcttctacatgtacca |
120 |
Q |
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| T |
12814421 |
acatcatcaggcataactgcattgttaataccagggggaaggacaacacattcgaggttttgcattcctctactaataaatgaatcttctacatgtacca |
12814322 |
T |
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| Q |
121 |
ttgaactagattccccccttgggaaattgatagtgaaagccaagcttataatatgggatgaagcaccaatgttgcatcgattttgctttgaggccgttga |
220 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814321 |
ttgaaccagattccctccttgggaaattgatagtgaaagccaagcttataatatgggatgaagcaccaatgttgcatcgattttgctttgaggccgttga |
12814222 |
T |
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| Q |
221 |
tagaaccttcagagagataatgaaagaggtggacgcaaaaaataaaacaattccatttggagggaaggttgtggtct |
297 |
Q |
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| T |
12814221 |
tagaaccttcagagacataatgaaggaggtggacgcgaaaaataaaacaattccatttggagggaaggttgtggtct |
12814145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 16968824 - 16969093
Alignment:
| Q |
22 |
catcatcaggcatagctgcattgttaataccaggggggaggacaacacattcgaggtttggctttcctctactaataaatgaatcttctacatgtaccat |
121 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||| | |||||||||||| || ||||| |||||||||||||||||||||| |||||||| |
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| T |
16968824 |
catcatcaggcatagctgcattgttaataccaggtggaaggacagcccattcgaggttttgcattcctgtactaataaatgaatcttctacgtgtaccat |
16968923 |
T |
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| Q |
122 |
tgaactagattccccccttgggaaattgatagtgaaagccaagcttataatatgggatgaagcaccaatgttgcatcgattttgctttgaggccgttgat |
221 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| | |||||||||||||| |||||| |
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| T |
16968924 |
tgaaccggattccccccttgggaaattagtagtgaaagccaagcttataatataggatgaagcaccaatgatgcataggttttgctttgaggctgttgat |
16969023 |
T |
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| Q |
222 |
agaaccttcagagagataatgaaagaggtggacgcaaaaaataaaacaattccatttggagggaaggttgtggtct |
297 |
Q |
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|| |||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
16969024 |
------ttttgagacataatgaaggaggtggacctgaaaaataaaaaaattccatttggagggaaggttgtggtct |
16969093 |
T |
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