View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20819_low_1 (Length: 270)

Name: NF20819_low_1
Description: NF20819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20819_low_1
NF20819_low_1
[»] chr2 (26 HSPs)
chr2 (13-253)||(8579553-8579793)
chr2 (10-252)||(9061204-9061446)
chr2 (155-250)||(9364485-9364580)
chr2 (156-252)||(10335711-10335807)
chr2 (10-105)||(17566146-17566241)
chr2 (155-249)||(9284380-9284474)
chr2 (10-134)||(10347740-10347864)
chr2 (10-135)||(8573568-8573693)
chr2 (164-249)||(9291780-9291865)
chr2 (155-231)||(7115835-7115911)
chr2 (10-52)||(7611976-7612018)
chr2 (155-249)||(9315877-9315971)
chr2 (10-52)||(9364665-9364707)
chr2 (162-252)||(11987684-11987774)
chr2 (76-133)||(9291899-9291956)
chr2 (161-252)||(12012748-12012836)
chr2 (164-252)||(8573725-8573813)
chr2 (172-252)||(9274355-9274435)
chr2 (92-135)||(9274475-9274518)
chr2 (161-252)||(12006314-12006405)
chr2 (10-113)||(12018951-12019054)
chr2 (10-52)||(9065656-9065698)
chr2 (163-249)||(9065812-9065898)
chr2 (163-252)||(9320837-9320926)
chr2 (164-252)||(10347616-10347707)
chr2 (167-252)||(12019090-12019175)
[»] chr3 (2 HSPs)
chr3 (10-252)||(39427468-39427722)
chr3 (10-135)||(37462443-37462568)
[»] chr1 (5 HSPs)
chr1 (155-252)||(29453494-29453591)
chr1 (163-252)||(29423120-29423209)
chr1 (163-252)||(29467978-29468067)
chr1 (10-137)||(29443384-29443511)
chr1 (163-222)||(29443519-29443578)
[»] chr4 (3 HSPs)
chr4 (10-137)||(561174-561301)
chr4 (159-252)||(561038-561131)
chr4 (10-50)||(26574900-26574940)
[»] chr5 (2 HSPs)
chr5 (10-137)||(36224364-36224497)
chr5 (156-212)||(36224295-36224351)
[»] chr7 (5 HSPs)
chr7 (164-233)||(45243544-45243613)
chr7 (164-233)||(45230282-45230351)
chr7 (10-132)||(45237907-45238029)
chr7 (10-132)||(45243656-45243778)
chr7 (164-233)||(45237800-45237869)
[»] chr8 (1 HSPs)
chr8 (168-252)||(41966911-41966995)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 8579553 - 8579793
Alignment:
Q  13 aatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctagtga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8579553 aatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttgtgttattctagtga 8579652  T
Q  113 tagaagtaaatttctgttggaagtaaaaggtgatctctatagagattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaa 212  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8579653 tagaagtaaagttctgttggaagtaaaaggtaatctctatagagattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaa 8579752  T
Q  213 ggaattcctaatttcaatgaaactatgatttatgttggaac 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8579753 ggaattcctaatttcaatgaaactatgatttatgttggaac 8579793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 9061204 - 9061446
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||| ||||||| ||||||||||||||||||| | |||||||| |   | ||||| ||||||  |||||||   | ||||| ||| ||||||||||||||    
T  9061204 aagactatggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctag 9061303  T
Q  110 tgatagaagtaaatttctgttggaagtaaaaggtgatctctatagagattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgtt 209  Q
    |||| || ||||  |||||||||||| |||   | |  |  ||| |  |  || |||||||||||||||||||||||| |||||| |||||| || ||||    
T  9061304 tgatggaggtaaggttctgttggaagcaaatcctaacttggataaaactcttaggaagctgttttggtatgatctcaagagtgaacaagttagttatgtt 9061403  T
Q  210 caaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
     ||||||||||||||||  ||||| ||||| ||||||||||||    
T  9061404 gaaggaattcctaattttgatgaagctatgttttatgttggaa 9061446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 9364580 - 9364485
Alignment:
Q  155 agattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttgg 250  Q
    |||| ||||||||||||||||||| |||||||| |||||| | |||||| |||||| ||||||||||||| | |||||| ||||||||| ||||||    
T  9364580 agatcgtaagaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttgg 9364485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 10335807 - 10335711
Alignment:
Q  156 gattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    |||||||||||| |||||||||||||| | || |||||| || ||| || |||| ||||||||||||||||  |||| |||||||||| ||||||||    
T  10335807 gattgtaagaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgacactatgatttgtgttggaa 10335711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 17566146 - 17566241
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttatt 105  Q
    ||||||||||||||||||||| |||||||||||||||||| || |  || | | | |||| || |||||||| || ||||||||||||||||||||    
T  17566146 aagaatatggatttagagataattggtgtaaattgtttaccttgggcgagtggcgtttcagtatacctttgatatatttgaagcctttatgttatt 17566241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 9284380 - 9284474
Alignment:
Q  155 agattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttg 249  Q
    |||||||||||||||| ||||||||||| | || |||||  |||||| || |||| ||||||||||||||||  ||||| ||||||||| |||||    
T  9284380 agattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttg 9284474  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 10347864 - 10347740
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||||| ||||||||||||||||||| | |||||| | |  || ||||| ||| ||  |||||||| ||  |||| |||  |||||||||||||    
T  10347864 aagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctag 10347765  T
Q  110 tgatagaagtaaatttctgttggaa 134  Q
    |||| |||||||  |||||||||||    
T  10347764 tgatggaagtaaggttctgttggaa 10347740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 8573568 - 8573693
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||| | ||||||||||||||||||| | |||||||| |   | ||||| |||| |  || ||| | ||||| || ||||||| ||||||||||    
T  8573568 aagaatatggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctag 8573667  T
Q  110 tgatagaagtaaatttctgttggaag 135  Q
    |||| |||||||  ||||||||||||    
T  8573668 tgatggaagtaaggttctgttggaag 8573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 9291865 - 9291780
Alignment:
Q  164 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttg 249  Q
    ||||||||||||||||||| | || |||||| || ||| || |||| ||||||||||||||||  ||||| ||||||||| |||||    
T  9291865 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttg 9291780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 7115835 - 7115911
Alignment:
Q  155 agattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatg 231  Q
    |||||||| ||||||| ||||||||||| | || || ||| |||||| ||||||| |||||||||||||||| ||||    
T  7115835 agattgtaggaagctggtttggtatgatttgaagagcgaacaagttagttgtgttgaaggaattcctaatttaaatg 7115911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 7612018 - 7611976
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttt 52  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  7612018 aagaatatggattaaaagatagttggtgtaaattgtttacttt 7611976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 9315971 - 9315877
Alignment:
Q  155 agattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttg 249  Q
    ||||||||||||||||||||||| |||  | |  |||||| |||||| || |||| |||||||| |||||||  ||||| ||||||||| |||||    
T  9315971 agattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatgaagctatgatttgtgttg 9315877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 9364707 - 9364665
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttt 52  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  9364707 aagaatatggattaaaagatagttggtgtaaattgtttacttt 9364665  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 11987684 - 11987774
Alignment:
Q  162 aagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||||| ||||||||||| | || |||||| || ||| || |||| | ||||||||||| ||| ||||| ||||||||| ||||||||    
T  11987684 aagaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaa 11987774  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 9291956 - 9291899
Alignment:
Q  76 ctttgagatctttgaagcctttatgttattctagtgatagaagtaaatttctgttgga 133  Q
    |||||| |||||||| |||||||||||||||||| ||| |||||||  ||||||||||    
T  9291956 ctttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttgga 9291899  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 12012748 - 12012836
Alignment:
Q  161 taagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    |||||||||| ||||||||||| | || |||    |||||| || |||| ||||||||||||||||| ||||| ||||||||| ||||||||    
T  12012748 taagaagctggtttggtatgatttgaagagt---caagttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaa 12012836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 8573725 - 8573813
Alignment:
Q  164 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||||||||||||||| | || |||||| |||| | || |||| |||||||||||||||  |||| | ||||| ||| ||||||||    
T  8573725 gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattcctaattggaatgcagctatgttttgtgttggaa 8573813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 9274435 - 9274355
Alignment:
Q  172 tttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||||||| | || |||||| |||||| || |||| ||||||||||||| ||||||| |||||| ||||  |||||||    
T  9274435 tttggtatgatttgaagagtgaacaagttagttttgttaaaggaattcctaacttcaatggaactattatttgggttggaa 9274355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 9274518 - 9274475
Alignment:
Q  92 gcctttatgttattctagtgatagaagtaaatttctgttggaag 135  Q
    |||||||||||||||||||||| |||||||  ||||||||||||    
T  9274518 gcctttatgttattctagtgatggaagtaaggttctgttggaag 9274475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 12006314 - 12006405
Alignment:
Q  161 taagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    |||||||||| ||||||||||| | || ||||||||||||| ||   || | |||||||| |||||| ||||| | ||||||| ||||||||    
T  12006314 taagaagctggtttggtatgatttgaagagtgaagaagttaattacattgagggaattccaaatttcgatgaagcgatgatttgtgttggaa 12006405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 12018951 - 12019054
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||||| ||||||||||||||||||| | ||||||||   ||| ||||| |||  |  |||||| |||| |||||  |||||| ||||||| ||    
T  12018951 aagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgag 12019050  T
Q  110 tgat 113  Q
    ||||    
T  12019051 tgat 12019054  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 9065656 - 9065698
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttt 52  Q
    |||||||||||| ||||||||||||||||||| | ||||||||    
T  9065656 aagaatatggatctagagatagttggtgtaaactttttacttt 9065698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 9065812 - 9065898
Alignment:
Q  163 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttg 249  Q
    ||||||| |||||||||||| | || |||||| |||||| || |||| ||||| |||||||||  ||||| ||| |||||| |||||    
T  9065812 agaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttcctaattggaatgacactgtgatttgtgttg 9065898  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 9320926 - 9320837
Alignment:
Q  163 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    |||||||||||||||||||| | || |||| | |||||| || |||| ||||||||||| ||||| ||| |  |||| ||| ||||||||    
T  9320926 agaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcctgatttccatggagttatgttttgtgttggaa 9320837  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 10347707 - 10347616
Alignment:
Q  164 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaat---tcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||||||||||||||| | || |||||| || ||| || |||| |||||||   ||||||| | |||||||||||| ||| ||||||||    
T  10347707 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctcctaatatgaatgaaactatgttttgtgttggaa 10347616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 12019090 - 12019175
Alignment:
Q  167 gctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    |||| ||||||||||| | || ||| |  |||||| || |||| ||||||||||||||||| ||||| | ||||||| ||||||||    
T  12019090 gctggtttggtatgatttgaagagtcagcaagttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaa 12019175  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 39427722 - 39427468
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttga---ggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattc 106  Q
    |||||||||||| |||| |||||||||||||||||||||||||||    ||| | ||| ||||||  |||||| |  |||||||||||||||||||||||    
T  39427722 aagaatatggatatagatatagttggtgtaaattgtttacttttgtaggggaatggtgtttcaattcacctttaatgtctttgaagcctttatgttattc 39427623  T
Q  107 tagtgatagaagtaaatttctgttggaagtaaaa------ggtgatctctatagagattgt---aagaagctgttttggtatgatctcaaaagtgaagaa 197  Q
     ||||||||||||||| |||||||||||||||||      |||||| || | || |||  |   |||||||||||||||||| ||||||||||| |  ||    
T  39427622 cagtgatagaagtaaagttctgttggaagtaaaatttaggggtgatttcaagagtgatcctaagaagaagctgttttggtattatctcaaaagttataaa 39427523  T
Q  198 gttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||| | ||||| | ||||||||||||||| ||| ||||||||||||| |||||    
T  39427522 gttacctatgttccaagaattcctaatttcattgagactatgatttatgctggaa 39427468  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 37462568 - 37462443
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||||| ||||||||||||||||||| | | |||| | ||  | ||||| |||| |  |||||||| |||||||| ||||||||||||||||||    
T  37462568 aagaatatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctag 37462469  T
Q  110 tgatagaagtaaatttctgttggaag 135  Q
    |||| |||||||  || |||||||||    
T  37462468 tgatggaagtaaggttttgttggaag 37462443  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 29453494 - 29453591
Alignment:
Q  155 agattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||| || || ||||||||| ||||||||    
T  29453494 agattgtgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatcaagctatgatttgtgttggaa 29453591  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 29423209 - 29423120
Alignment:
Q  163 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| || || | ||||||| ||||||||    
T  29423209 agaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagccatgatttgtgttggaa 29423120  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 29467978 - 29468067
Alignment:
Q  163 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||| ||||||||||||||||||| |||||| | |||| || |||| |||||||||||||||| |||||| ||||||||| ||||||||    
T  29467978 agaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatgaagctatgatttgtgttggaa 29468067  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 29443384 - 29443511
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||||| ||||||||| ||||||||| | |||||||| |  || ||||| |||| |  |||||||||| |||||| |  |||| ||||||| ||    
T  29443384 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 29443483  T
Q  110 tgatagaagtaaatttctgttggaagta 137  Q
     ||||||||||   |||||||| |||||    
T  29443484 cgatagaagtatggttctgttgcaagta 29443511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 29443519 - 29443578
Alignment:
Q  163 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattccta 222  Q
    ||||||||||||||||||||||||| ||||||   |||| || |||| ||||||||||||    
T  29443519 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 29443578  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 561301 - 561174
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||   ||  |||| || |||||| | | | | |||||||||| |||||||| |    
T  561301 aagaatatggatttagagatagttggtgtgtattgtttactttggaggaagtgtttttcagtagaccttttacaccatggaagcctttaggttattctgg 561202  T
Q  110 tgatagaagtaaatttctgttggaagta 137  Q
    ||||||||||||| ||||||||||||||    
T  561201 tgatagaagtaaagttctgttggaagta 561174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 561131 - 561038
Alignment:
Q  159 tgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||| ||| ||||||||||||||||||||||| ||  || ||| ||||||| ||||||||||||| ||||| ||  |||||||||||||||||    
T  561131 tgtaaaaagttgttttggtatgatctcaaaagtaaaagagctacctgtgttccaggaattcctaatatcaataaagttatgatttatgttggaa 561038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 26574940 - 26574900
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttact 50  Q
    |||||||||||| ||||||||||||||||||| | ||||||    
T  26574940 aagaatatggatgtagagatagttggtgtaaactttttact 26574900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 36224497 - 36224364
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaaccttt------gagatctttgaagcctttatgtta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||| | ||  ||| ||  ||||||      || |||||||||||||| ||||||    
T  36224497 aagaatatggatttagagatagttggtgtaaattgtttactttgtgggaatggtatttcgattcaccttttaaattgatatctttgaagccttcatgtta 36224398  T
Q  104 ttctagtgatagaagtaaatttctgttggaagta 137  Q
    ||| ||||||||||||||| ||||||||||||||    
T  36224397 ttccagtgatagaagtaaagttctgttggaagta 36224364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 36224351 - 36224295
Alignment:
Q  156 gattgtaagaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaa 212  Q
    |||| |||||||  |||||||||| ||||||||||| | |||||||| |||||||||    
T  36224351 gattctaagaaggagttttggtattatctcaaaagttatgaagttacctgtgttcaa 36224295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 45243613 - 45243544
Alignment:
Q  164 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaa 233  Q
    |||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||| ||||||||||    
T  45243613 gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattcctactttcaatgaa 45243544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 45230351 - 45230282
Alignment:
Q  164 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaa 233  Q
    ||||||||||||||||||| |||| |||||| ||||||||  ||||||||||||||||| ||||||||||    
T  45230351 gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattcctactttcaatgaa 45230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 45238029 - 45237907
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||||| ||||||||||||||||||| | |||||||| |  || ||||| ||||||   | | ||| ||  |||| ||||||||||||||| ||    
T  45238029 aagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaag 45237930  T
Q  110 tgatagaagtaaatttctgttgg 132  Q
     ||| |||||||| |||||||||    
T  45237929 cgatcgaagtaaagttctgttgg 45237907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 45243778 - 45243656
Alignment:
Q  10 aagaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttgagatctttgaagcctttatgttattctag 109  Q
    |||||||||| | |||||||| |||||||||| | |||||||| |   | ||||| ||||||   | ||||  |||||||| ||||||||||||||| ||    
T  45243778 aagaatatggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgag 45243679  T
Q  110 tgatagaagtaaatttctgttgg 132  Q
    |||| |||||||| |||||||||    
T  45243678 tgatcgaagtaaagttctgttgg 45243656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 45237869 - 45237800
Alignment:
Q  164 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaa 233  Q
    |||| ||||||||||||| ||||| | |||| |||||| || ||||| ||||||||||| ||| ||||||    
T  45237869 gaagttgttttggtatgacctcaagaatgaacaagttatttatgttcgaggaattcctactttgaatgaa 45237800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 41966911 - 41966995
Alignment:
Q  168 ctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatgaaactatgatttatgttggaa 252  Q
    ||||||||||||||| | || |||||| || |||||| |||| ||||||||||||||||  ||||| | ||| ||| ||||||||    
T  41966911 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaa 41966995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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