View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2081_high_1 (Length: 377)
Name: NF2081_high_1
Description: NF2081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2081_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 6593064 - 6593420
Alignment:
| Q |
10 |
ataatactatttagttgattagaggataaacaattcctcttcaataagacgttgttggcgagaggagtatgaatctactctcgagttggcataacgcaca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
6593064 |
ataatactatttagttgattagaggataaacaattcctcttcaataagacgttgtcggcgagaggagtatgaatctactctcgagttggcataacacaaa |
6593163 |
T |
|
| Q |
110 |
gacatgctgaaataatgcagcggcacagcaacatgttgtcaatcacatatggaagaaaccgagctacaagtgtaatgtcgatgcagttttctctaggtca |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6593164 |
gacatgctgaaataatgcagtggcacagcaacaagttgtcaatcacatatggaagaaaccgagctacaagtgtaatgtcgatgcagttttctctaggtca |
6593263 |
T |
|
| Q |
210 |
agtaacatagtggggattggtatgtgtattagagacgatcatggaagttttgttttagcaaacggaatggatttcacccatcctaaaagttgatgaagga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6593264 |
agtaacatagtggggattggtatgtgtattagagacgatcatggaagttttgttttagcaaacggaatgaatttcacccatcctaaaagttgatgaagga |
6593363 |
T |
|
| Q |
310 |
gaggctt------tactgttcgctatcagatggttgaaggatttgcatattaataat |
360 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6593364 |
gaggctttaggtctactgttcgctatcagatggttgaaggatttgcatattaataat |
6593420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 360
Target Start/End: Original strand, 6904237 - 6904439
Alignment:
| Q |
170 |
gagctacaagtgtaatgtcgatgcagttttctctaggtcaagtaacatagtggggattggtatgtgtattagagacgatcatggaagttttgttttagca |
269 |
Q |
| |
|
|||||| ||| |||| ||||||||| |||||| |||||||||| | ||||||||||| ||||||||||||| || | | |||||||||||||||||| |
|
|
| T |
6904237 |
gagctataagggtaacatcgatgcagctttctccaggtcaagtagtagagtggggattgaaatgtgtattagaggcgtttaaggaagttttgttttagca |
6904336 |
T |
|
| Q |
270 |
aa--cggaatggatttcacccatcctaaaagttgatgaaggagaggcttta----------ctgttcgctatcagatggttgaaggatttgcatattaat |
357 |
Q |
| |
|
|| | |||| |||| |||||||||||||||||||| |||||| |||| |||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
6904337 |
aaagcataatgaattttgtccatcctaaaagttgatgaatgagaggatttaggcctactgtttgtttgttatcagatggttgaaggatttgcatattagt |
6904436 |
T |
|
| Q |
358 |
aat |
360 |
Q |
| |
|
||| |
|
|
| T |
6904437 |
aat |
6904439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 5444496 - 5444354
Alignment:
| Q |
81 |
aatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacat---gttgtcaatcacatatggaagaaacc-------- |
169 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| | |||||||| ||| ||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
5444496 |
aatctactctcaagttggcataacgcgcatacatgtcgcaataatgcggcgaaacaacaacagaaagttgtcaatcacagatggaagaaaccgaatgcaa |
5444397 |
T |
|
| Q |
170 |
-gagctacaagtgtaatgtcgatgcagttttctctaggtcaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
5444396 |
ggagctacaagtgtaatgtcgatgcagctttctccatgtcaag |
5444354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 5453540 - 5453398
Alignment:
| Q |
81 |
aatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacat---gttgtcaatcacatatggaagaaacc-------- |
169 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| | |||||||| ||| ||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
5453540 |
aatctactctcaagttggcataacgcgcatacatgtcgcaataatgcggcgaaacaacaacagaaagttgtcaatcacagatggaagaaaccgaatgcaa |
5453441 |
T |
|
| Q |
170 |
-gagctacaagtgtaatgtcgatgcagttttctctaggtcaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
5453440 |
ggagctacaagtgtaatgtcgatgcagctttctccatgtcaag |
5453398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 6904165 - 6904214
Alignment:
| Q |
67 |
gcgagaggagtatgaatctactctcgagttggcataacgcacagacatgc |
116 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6904165 |
gcgagaggggttagaatctactctcgagttggcataacgcgcagacatgc |
6904214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 15824665 - 15824570
Alignment:
| Q |
225 |
attggtatgtgtattagagacgatcatggaagttttgttttagcaaa--cggaatggatttcacccatcctaaaagttgatgaaggagaggcttta |
318 |
Q |
| |
|
|||||||| || || || |||||||| ||||| || ||||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
15824665 |
attggtatatgcatcagggacgatcaaggaagcttcgttttagcaaaaacaaaatggatttcacccatccttaaagttgatgaaggagaagcttta |
15824570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University