View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2081_low_5 (Length: 236)

Name: NF2081_low_5
Description: NF2081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2081_low_5
NF2081_low_5
[»] chr2 (4 HSPs)
chr2 (131-201)||(18246288-18246358)
chr2 (143-201)||(18256136-18256194)
chr2 (16-69)||(18246173-18246226)
chr2 (146-190)||(18253408-18253452)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 18246288 - 18246358
Alignment:
Q  131 aaggaatgtaacttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttcttgaatatttg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246288 aaggaatgtaacttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttcttgaatatttg 18246358  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 18256194 - 18256136
Alignment:
Q  143 ttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttcttgaatatttg 201  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18256194 ttgagaaatttgtgacatgagatgaataaatgtatgtgttttattttcttgaatatttg 18256136  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 18246173 - 18246226
Alignment:
Q  16 gttaaaactatgatgttactcatgaaagaatgaggaattaatcttgaggattag 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246173 gttaaaactatgatgttactcatgaaagaatgaggaattaatcttgaggattag 18246226  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 18253408 - 18253452
Alignment:
Q  146 agaaatttgtgacatgagatgaataaatgtatgtgttgtattttc 190  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||    
T  18253408 agaaatttgtgacatgagatgaataaacgtacatgttgtattttc 18253452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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