View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20820_low_2 (Length: 545)
Name: NF20820_low_2
Description: NF20820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20820_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 592264 - 592777
Alignment:
| Q |
18 |
aacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatccccactttgagaaa |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592264 |
aacttcacgacccaaaaggcatctactggctgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatccccactttgagaaa |
592363 |
T |
|
| Q |
118 |
tagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatttacaattatcaacataaagtaaccaacaatcaa |
217 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
592364 |
tagtcctgtaaatttggttcatgtttgagaaaacaacacagccaaagaaagctgcaagagaggaatttacaattatcaacataaagtaacaaacaatcaa |
592463 |
T |
|
| Q |
218 |
gtctcagaagtttgataccattattataccatgatcatgacaagtcgaaacagaattcaagagcttctccagcttatcaaaatatgataatgaattcaag |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592464 |
gtctcagaagtttgataccattattataccatgatcatgtcaagtcgaaacagaattcaagagcttctccagcttatcaaaatatgataatgaattcaag |
592563 |
T |
|
| Q |
318 |
ttgaagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtggagttgataaccattgggatgcaaacatgactgctgaaattg |
417 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
592564 |
ttgcagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtggagttgataaccattgggatgcaaacatgactgctgacattg |
592663 |
T |
|
| Q |
418 |
tgataaaaatgtatcaccaccatctactataaagttattactacctccattcatgttcaattgtcgtctaaggttatcacccccaactacca---tgtta |
514 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
592664 |
tgat--aaatgtatcaccaccatctactataaagttattactacctccattcattttcaattgtcgtctaaggttatcacccccaactaccatgttgtta |
592761 |
T |
|
| Q |
515 |
attttgatggaattgt |
530 |
Q |
| |
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|||||||||||||||| |
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| T |
592762 |
attttgatggaattgt |
592777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 580163 - 579651
Alignment:
| Q |
18 |
aacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatccccactttgagaaa |
117 |
Q |
| |
|
||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580163 |
aacttcacgacccaagagacatctactggctgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatccccactttgagaaa |
580064 |
T |
|
| Q |
118 |
tagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatttacaattatcaacataaagtaaccaacaatcaa |
217 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
580063 |
tagtcctgtaaatttggttcatgtttgagaaat-aacacagtgaaagaaagttgcaagagaggaatttacaattatcaacataaagaaacaaacaatcaa |
579965 |
T |
|
| Q |
218 |
gtctcagaagtttgataccattattataccatgatcatgacaagtcgaaacagaattcaagagcttctccagcttatcaaaatatgataatgaattcaag |
317 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
579964 |
gtctcagaggtttgataccattattataccatggtcatgtcaagtccaaacagaattcaagagcttctccagcttatcaaaatatgataatgaattcaag |
579865 |
T |
|
| Q |
318 |
ttgaagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtgga-gttgataaccattgggatgcaa--------acatgactg |
408 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||| ||||||| ||||||| | |
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| T |
579864 |
ttgcagtgtaaaattttattttca--------aagaatttggcttcatgaaaagtgtggaggtggataaccatt-agatgcaaacatgagtacatgacag |
579774 |
T |
|
| Q |
409 |
ctgaaattgtgataaaaatgtatcaccaccatctactataaagttattactacctccattcatgttcaattgtcgtctaaggttatcacccccaactacc |
508 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||||||||| ||||| | ||||| |||||||||||| |||| |||||||||||||||||| |
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|
| T |
579773 |
ctgacattgtgat--aaatgtatcaccactatctactataaagttattattacctgctttcattttcaattgtcgtttaagtttatcacccccaactacc |
579676 |
T |
|
| Q |
509 |
a---tgttaattttgatggaattgt |
530 |
Q |
| |
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| ||||||||||||| ||||||| |
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|
| T |
579675 |
atgttgttaattttgatagaattgt |
579651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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