View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20820_low_3 (Length: 432)
Name: NF20820_low_3
Description: NF20820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20820_low_3 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 16383344 - 16382938
Alignment:
| Q |
17 |
acatgttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttgatctctaaacaatcctcataattttctcaatgcatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
16383344 |
acatgttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttaatctctaaacaatgctcataattttctcaatacatat |
16383245 |
T |
|
| Q |
117 |
gatatgcatatacttatcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16383244 |
tatatgcatatacttatcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagatt |
16383145 |
T |
|
| Q |
217 |
gtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16383144 |
gtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattccctca |
16383045 |
T |
|
| Q |
317 |
aatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttcatgctctttaccttttatcca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || |
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| T |
16383044 |
aatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttcaagctctttagattttattca |
16382945 |
T |
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| Q |
417 |
ttcattt |
423 |
Q |
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||||||| |
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| T |
16382944 |
ttcattt |
16382938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 132 - 396
Target Start/End: Original strand, 15461 - 15725
Alignment:
| Q |
132 |
atcatttaaacatttcatcaaatgtgattacagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaattgta |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |
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| T |
15461 |
atcatttaaacatttcatcaaatgtgattacagcttagggtgtcagggctaatcagcaatggaccttatgttcttgtggtagattgtgatatgaattgta |
15560 |
T |
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| Q |
232 |
atgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacat |
331 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||| |||||||||| |||||||| ||||||||||||||| | |
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| T |
15561 |
atgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattccctcaaatgtttcacaacct |
15660 |
T |
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| Q |
332 |
tagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttca |
396 |
Q |
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| T |
15661 |
tagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaccaaaatttca |
15725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 15246 - 15295
Alignment:
| Q |
19 |
atgttcctcatagatacaaaggaggagctctcaatacattggtgtgtact |
68 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
15246 |
atgttcctcacagattcaaaggaggagctctcaatacattggtatgtact |
15295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 162 - 390
Target Start/End: Complemental strand, 17582106 - 17581878
Alignment:
| Q |
162 |
cagcttagggtatcagggctaatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgt |
261 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17582106 |
cagctaagggtttcagggctaatcagcaatggcccttatgtacttgtcttagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgt |
17582007 |
T |
|
| Q |
262 |
gcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacattagcaagaaagacatatataatagtgaggc |
361 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| ||||| |||| |
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| T |
17582006 |
gcttttttcttgatcctgaaacctccaaagatcttgcttttgtccaattccctcaaatgtttcacaacctcagcaagaaagatatatatgatagtcaggc |
17581907 |
T |
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| Q |
362 |
taggaatgcttttacggtatgtcaccaaa |
390 |
Q |
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| T |
17581906 |
taggaatgcttttacggtatgtcaccaaa |
17581878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 181 - 380
Target Start/End: Original strand, 271589 - 271788
Alignment:
| Q |
181 |
taatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaa |
280 |
Q |
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||||||||||||| |||||||| ||| || || ||||||||| |||||||||| |||| |||||||||||| ||||||| || ||||||||||| | |
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| T |
271589 |
taatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgatccaga |
271688 |
T |
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| Q |
281 |
aatatctcaagatcttgcttttgtccaattcccacaaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggta |
380 |
Q |
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|| ||| || || |||| ||||| |||||||| ||||||||||||||| ||||||| |||||||| ||| ||| | | |||||| |||||||| |||| |
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| T |
271689 |
aacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatgataatcaatctaggactgcttttaaggta |
271788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 17582771 - 17582707
Alignment:
| Q |
19 |
atgttcctcatagatacaaaggaggagctctcaatacattggtgtgtactcatttaatttgatct |
83 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
17582771 |
atgttcctcatagatacaaaggaggagcacttaatacattggtgtgtactcatttaatttgatct |
17582707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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