View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20820_low_5 (Length: 217)

Name: NF20820_low_5

Description: NF20820

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20820_low_5

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 60; E-Value: 9e-26

Query Start/End: Original strand, 56 - 201

Target Start/End: Original strand, 8529666 - 8529810

Alignment:

Q	56	atcaaaattatagaaagagtggtgttagtctctctatatagtcattgtctatgtaaccaaaaacaaattagtccttgtcnnnnnnnnnnnnnggacaaat	155	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	8529666	atcaaaagcatagaaagagtcgtattagtctctctatgtagtcattgtctatgtaa-caaaaacaaattagtccttgtctctcttttttctt-gacaaat	8529763	T

Q	156	agtcttgtct-tttatttgtcattctaataagaattatttattttct	201	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8529764	agtcttgtctctttatttttcattctaataagaattatttattttct	8529810	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2

Raw Score: 52; E-Value: 5e-21

Query Start/End: Original strand, 64 - 201

Target Start/End: Original strand, 8518170 - 8518311

Alignment:

Q	64	tatagaaagagtggtgttagtctctctatatagtcattgtctatgtaac-caaaaacaaattagtccttgtc--nnnnnnnnnnnnnggacaaatagtct	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	8518170	tatagaaagagtcgtattagtctctctatatagtcattgtctaagtaacaaaaaaacaaattagtccttgtcttttttttttttttgggacaaatagtct	8518269	T

Q	161	tgtct-tttatttgtcattctaataagaattatttattttct	201	Q
		\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8518270	tgtctctctatttgccattctaataagaattatttattttct	8518311	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]