View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_high_10 (Length: 535)

Name: NF20821_high_10
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_high_10
NF20821_high_10
[»] chr4 (4 HSPs)
chr4 (10-255)||(52001758-52002003)
chr4 (287-519)||(52002002-52002234)
chr4 (148-241)||(52011785-52011878)
chr4 (477-517)||(52012165-52012205)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 52001758 - 52002003
Alignment:
Q  10 acatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52001758 acatcatcatctttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataa 52001857  T
Q  110 atgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaagg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52001858 atgactcgttcctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaagg 52001957  T
Q  210 tatttgattttctggtatttccttcctctgatgatgatcatcaatg 255  Q
    || |||||||||||||||||||||||||||||||||||||||||||    
T  52001958 tagttgattttctggtatttccttcctctgatgatgatcatcaatg 52002003  T

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Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 287 - 519
Target Start/End: Original strand, 52002002 - 52002234
Alignment:
Q  287 tgagtggtttctttccttttggatcggaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagtcgggttcagttcctct 386  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52002002 tgagtggtttctttccttttggatcagaagtgttttcaaagttgtagagttttgtgcgtttagaagaagaggcatcatcggagtcgggttccgttcctct 52002101  T
Q  387 cttgagaaagggttcatgtggtctttcatctctatgaatatgattgggagattcaggaacatatgttgatggggataaggtaaggattgcaccaatttct 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52002102 cttgagaaagggttcatgtggtctttcatctctatgaatatgattgggagattcaggaacatatgttgatggggctaaggtaaggattgcaccaatttct 52002201  T
Q  487 ttgttggaaaaaccgtggccctttagttgttct 519  Q
    |||||||||||||||||||||||||||||||||    
T  52002202 ttgttggaaaaaccgtggccctttagttgttct 52002234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 52011785 - 52011878
Alignment:
Q  148 tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgat 241  Q
    |||||||||| ||||||||||||  || ||||  ||||  |||| ||||| ||| |||  | |||||||||||||| |||||||||||||||||    
T  52011785 tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctgat 52011878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 477 - 517
Target Start/End: Original strand, 52012165 - 52012205
Alignment:
Q  477 accaatttctttgttggaaaaaccgtggccctttagttgtt 517  Q
    |||||||||||||| |||||||||||| ||||| |||||||    
T  52012165 accaatttctttgtcggaaaaaccgtgacccttgagttgtt 52012205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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