View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_12 (Length: 525)
Name: NF20821_high_12
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 6 - 519
Target Start/End: Complemental strand, 1985629 - 1985116
Alignment:
| Q |
6 |
aattttctatatccattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattg |
105 |
Q |
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| T |
1985629 |
aattgtctatatccattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattg |
1985530 |
T |
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| Q |
106 |
gcgtcaagaactttttgaaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaa |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1985529 |
gcgtcaagaactttttgaaatgcaaaatcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaa |
1985430 |
T |
|
| Q |
206 |
ttgacaaagttggaacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcatgca |
305 |
Q |
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| T |
1985429 |
ttgacaaagttggaacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcattcc |
1985330 |
T |
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| Q |
306 |
tactcgagttccttcaattttatgccatgcaagaagaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatc |
405 |
Q |
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| T |
1985329 |
tacttgagttccttcaattttatgccatgcaagaagaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatc |
1985230 |
T |
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| Q |
406 |
tcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaa |
505 |
Q |
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| T |
1985229 |
tcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaa |
1985130 |
T |
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| Q |
506 |
aatgctgatgatgt |
519 |
Q |
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|||||||||||||| |
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| T |
1985129 |
aatgctgatgatgt |
1985116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 1947704 - 1948180
Alignment:
| Q |
18 |
ccattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaact |
117 |
Q |
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| T |
1947704 |
ccattttcaatgtgccaaagcttcttatggctagtgatccagattcttatgttccacaacaagttgcaattggtccttaccattattggagaccagaact |
1947803 |
T |
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| Q |
118 |
ttttgaaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttg |
217 |
Q |
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| T |
1947804 |
ctatgaaatgcaaagttacaagcttgcagccacaaaaagattcttgaaatcactacaaagtttcaagttagataaccttgttgaccaattgacaaagtat |
1947903 |
T |
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| Q |
218 |
gaacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcatgcatactcgagttcc |
317 |
Q |
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| T |
1947904 |
gaacaaagggttagaggatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttacttgagttac |
1948003 |
T |
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| Q |
318 |
ttcaattttatgccatgcaagaa---gaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgc |
414 |
Q |
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||||| ||||||| ||||||||| | | ||| || |||| |||| || | |||||| ||||| || |||||| ||| || | || | ||| |||||| |
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| T |
1948004 |
ttcaaatttatgcaatgcaagaaggtgcaacaaaaagggtagtttcatctagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgc |
1948103 |
T |
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| Q |
415 |
aattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattct |
491 |
Q |
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| T |
1948104 |
gatgttgagagacattgttatgctcgagaatcaaattccgttatttgttttgagaaaattgcttgagttcaaattct |
1948180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 1978702 - 1978234
Alignment:
| Q |
18 |
ccattttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
1978702 |
ccattttcaatgtgccaaagcttcttatggctagtgatccagattcttatgttccacaacaagttgcaattggtccttaccattattggagatcagaact |
1978603 |
T |
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| Q |
118 |
ttttgaaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttg |
217 |
Q |
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| T |
1978602 |
ctatgaaatgcaaagttacaagcttgcagcaacaaaaagattcttgaaatcactacaaagtttcaaattagataaccttgttgaccaattgacaaagtat |
1978503 |
T |
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| Q |
218 |
gaacaaaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcatgcatactcgagttcc |
317 |
Q |
| |
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||||||| |||||||||| |||||||||||||| |||||||| || ||||| ||| ||||||||||| ||||||||||||| | |||||||||| | |
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| T |
1978502 |
gaacaaagagttagagcatgttaccacaaattcttagatttgaacggagaaacgatggtttggatgatgatcgttgatgcatcattcttactcgagttac |
1978403 |
T |
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| Q |
318 |
ttcaattttatgccatgcaagaa---gaatcaagaaaggtaatttcttccaacatgtctcattttgtgaactatgttgggaggagattatctcctaatgc |
414 |
Q |
| |
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||||| ||||||| ||||||||| ||| ||| | || | ||| || | |||||| ||||| || |||||| ||| || | || | ||| |||||| |
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| T |
1978402 |
ttcaaatttatgcaatgcaagaaggtgaaccaaagagggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgc |
1978303 |
T |
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| Q |
415 |
aattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagtt |
483 |
Q |
| |
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||| |||| || ||||| |||||||||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
1978302 |
aatgttgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagtt |
1978234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 5624756 - 5625035
Alignment:
| Q |
23 |
ttcaatgtgccaaagcttcttatggctagtgatccaaattcttatgttccacaacaagttgcaattggtccctaccattattggcgtcaagaactttttg |
122 |
Q |
| |
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|||||||| ||||||| ||| |||||||||||||| |||||||| ||| |||||| |||||||||| || ||||||| |||||||||||| |||| || |
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| T |
5624756 |
ttcaatgtaccaaagccacttttggctagtgatccagattcttatactcctcaacaaattgcaattggaccttaccatttttggcgtcaagagctttatg |
5624855 |
T |
|
| Q |
123 |
aaatgcaaactcacaagcttgcatcaacaaaaagattccaaaaacaactacaaagtctcaagatagataatcttgttgaccaattgacaaagttggaaca |
222 |
Q |
| |
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| T |
5624856 |
aaatggagatatataagattgcttcaacaaaaagattccaaagccaattacaaagtctcaagttagaacatattgttgaccaattgataaggttagagca |
5624955 |
T |
|
| Q |
223 |
aaagattagagcatgctaccacaaattcttggatttgaatggcgaaaccttggcgtggatgatgattgttgatgcatcat |
302 |
Q |
| |
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| T |
5624956 |
caaaattagatcatgctaccataaatatttaaattttaatgttgaaacattgatgtggatgatggttgttgatgcctcat |
5625035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 490
Target Start/End: Original strand, 5625128 - 5625226
Alignment:
| Q |
392 |
gggaggagattatctcctaatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattc |
490 |
Q |
| |
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||||||| |||| || ||||||||| |||| || || || |||||||| |||||||| || |||||| |||||||||||||| | ||||| |||||| |
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| T |
5625128 |
gggaggaaattaggtcataatgcaatcttgaaagacatagtaatgcttgaaaatcaaatccctttatttattttgagaaagatgttggagtttaaattc |
5625226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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