View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20821_high_13 (Length: 506)
Name: NF20821_high_13
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Original strand, 12552630 - 12553113
Alignment:
| Q |
15 |
tcatttggtaacatgggaaattatccttataaccccttagggaatattaaccctagctttaatccattcaatttgtttttgaatggaacaaacacaattc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552630 |
tcatttggtaacatgggaaattatccttataaccccttagggaatattaaccctagctttaatccattcaatttgtttttgaatggaacaaacacaattc |
12552729 |
T |
|
| Q |
115 |
aaactaacgagccattaggtttgagtggtggtgaagaatatgctatgaaccctagcttatactcttatggacaaagtgagtcttcaaagcaggatatttc |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552730 |
aaactaatgagccattaggtttgagtggtggtgaagaatatgctatgaaccctagtttatactcttatggacaaagtgagtcttcaaagcaggatatttc |
12552829 |
T |
|
| Q |
215 |
aaaaggtgaatcaagtttacaagatcttgattatagcaaaatgagaagcatttcatgtgtaaatcaagaagaaaatctacttcctgctttggttgcttcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552830 |
aaaaggtgaatcaagtttacaagatcttgattatagcaaaatgagaagcatttcatgtgtaaatcaagaagaaaatctacttcctgctttggttgcttcc |
12552929 |
T |
|
| Q |
315 |
tctcctagaactggaatcttcaatcaaatcgaaaatgaccgcaacaaagctcaaatgtccatcgatcactcaccttcaaatgcaatctttgatgattggg |
414 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552930 |
tctcctagaattggaatcttcaatcaaatcgaaaatgaccgcaacaaagctcaaatgtccatcgatcactcaccttcaaatgcaatctttgatgattggg |
12553029 |
T |
|
| Q |
415 |
agaagttccttgacgatgaatcaagtggtggttcctactggaaagagcttttagagtaagcaatcacaaatttaatagtattat |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12553030 |
agaagttccttgacgatgaatcaagtggtggttcctactggaaagagcttttagagtaagcaatcacaaatttaatagtattat |
12553113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University