View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_14 (Length: 467)
Name: NF20821_high_14
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 35448543 - 35448982
Alignment:
| Q |
11 |
cacagaaacacaagagagaggacataccagaaaacagagaaacaagatccggaaagctagaacaaatgtttagaaaatccataactgcttcattgtcaga |
110 |
Q |
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| T |
35448543 |
cacagaaacacaagagagaggacataccagaaaacagagaaacaagatccggaaagctagaacaagtgtttagaaaatccataactgcttcattgtcaga |
35448642 |
T |
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| Q |
111 |
atctgagttggactcgacaccagagattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgagga |
210 |
Q |
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| T |
35448643 |
atctgagttggactcgataccagagattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgagga |
35448742 |
T |
|
| Q |
211 |
aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctc |
310 |
Q |
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| T |
35448743 |
aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctc |
35448842 |
T |
|
| Q |
311 |
cgtgagcagacatctcaaccatacgaaatgatgatccaccattattatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacatt |
410 |
Q |
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| T |
35448843 |
cgtgagcagacatctcaaccatatgaaatgatgatccaccattactatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacatt |
35448942 |
T |
|
| Q |
411 |
ttcatcaacaccaaacatgctaggagaagaacttggatat |
450 |
Q |
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| T |
35448943 |
ttcatcaacaccaaacatgctaggagaagaacttggatat |
35448982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 134 - 450
Target Start/End: Original strand, 35448891 - 35449213
Alignment:
| Q |
134 |
agattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgaggaaaa---cttgaatattcaggttg |
230 |
Q |
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|||||||||||||||| |||| | |||| ||| || |||||||| | ||||| |||| ||||| ||||| |||| || |||| ||||||||||| |
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| T |
35448891 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
35448990 |
T |
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| Q |
231 |
tactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaacc |
330 |
Q |
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| T |
35448991 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
35449090 |
T |
|
| Q |
331 |
atacgaaatgatgatcc---accattattatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaaca |
427 |
Q |
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| T |
35449091 |
atacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcatcaataccaaaca |
35449190 |
T |
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| Q |
428 |
tgctaggagaagaacttggatat |
450 |
Q |
| |
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||| || |||||||||||||||| |
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| T |
35449191 |
tgcgagtagaagaacttggatat |
35449213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 347
Target Start/End: Original strand, 35440921 - 35441087
Alignment:
| Q |
184 |
tttctatcagcaccagacatgtgagga---aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagt |
280 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| |||| | |||||||||||| |
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| T |
35440921 |
tttccatcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagt |
35441020 |
T |
|
| Q |
281 |
tctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
347 |
Q |
| |
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| T |
35441021 |
tctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 248 - 356
Target Start/End: Original strand, 35449239 - 35449347
Alignment:
| Q |
248 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
347 |
Q |
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|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| |||||||||| ||| |||||||| |
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| T |
35449239 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcc |
35449338 |
T |
|
| Q |
348 |
accattatt |
356 |
Q |
| |
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||||||||| |
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| T |
35449339 |
accattatt |
35449347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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