View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_18 (Length: 425)
Name: NF20821_high_18
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 31345554 - 31345161
Alignment:
| Q |
10 |
ataatacacagtcgtgaaaattcatgaagttgcaattcgcaataaatagtattttccctttaaagttnnnnnnnntccattgtgataagaaagtggttct |
109 |
Q |
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| T |
31345554 |
ataatacacagtcgtgaaaattcacgaagttgcaattcgcaataaatagtattttccctttaaagttaaaaaaaatccattgtgataagaaagtggttct |
31345455 |
T |
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| Q |
110 |
agaatatgaatgacatcaaatcggaattaattctcttgattccatgttaatgcacatataatgaaggaaataaatgataatatatatttctattttattc |
209 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31345454 |
agaatatgaatgacataaaatcagaattaattctcttgattccatgttaatgcacatataatgaaggaaataaatgataatatatatttctattttattc |
31345355 |
T |
|
| Q |
210 |
agaacaaagtgtaagatatcaaatataacattcttgtcttgacaaaaaagatatatactaacattcttgtcaatcaagacttgatcaatggaaatgaatg |
309 |
Q |
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| T |
31345354 |
aaaacaaagtgtaagatatcaaatataacattcttgtcttgacaaaaaagatatatactaacattcttgtcaatcaagacttgatcaatggaaatgaa-- |
31345257 |
T |
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| Q |
310 |
aatgaaataccaagtattcattgattttaagagaaaaagtggaaagaaaattgctaaactttattgtctatgatgagaattgaaagcaatgataattg |
407 |
Q |
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| T |
31345256 |
--tgaaataccaagtattcattgattttaagagaaatagtggaaagaaaattgctaaactttattgtctatgatgagaattgaaagcagtgataattg |
31345161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 85 - 407
Target Start/End: Complemental strand, 31356395 - 31356077
Alignment:
| Q |
85 |
tccattgtgataagaaagtggttctagaatatgaatgacatcaaatcggaattaattctcttgattccatgttaatgcacatataatgaaggaaataaat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31356395 |
tccattgtgataagaaagtggttctagaatatgaatgacatcaaatcggaatcaattctcttgattccatgttaatgcacatataatgaagaaaataaat |
31356296 |
T |
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| Q |
185 |
gataatatatatttctattttattcagaacaaagtgtaagatatcaaatataacattcttgtcttgacaaaaaagatatatactaacattcttgtcaatc |
284 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31356295 |
gataatatatagttttattttattcagaacaaagtgtaagatatcaaatataacattcttgtcttgacaaaaaagatatatactaacattcttgtcaatc |
31356196 |
T |
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| Q |
285 |
aagacttgatcaatggaaatgaatgaatgaaataccaagtattcattgattttaagagaaaaagtggaaagaaaattgctaaactttattgtctatgatg |
384 |
Q |
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| T |
31356195 |
aagacttgatcaacggaaatgaa----tgaaataccaagtattcattggttttaagagaaatagtggaaataaaattgctaaactttattgtctatgatg |
31356100 |
T |
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| Q |
385 |
agaattgaaagcaatgataattg |
407 |
Q |
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| T |
31356099 |
agaattgaaagcaatgataattg |
31356077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 10503716 - 10503660
Alignment:
| Q |
10 |
ataatacacagtcgtgaaaattcatgaagttgcaattcgcaataaatagtattttcc |
66 |
Q |
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||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
10503716 |
ataatacacagtcatgaaaaatcacgaagttgcaattcgtgataaatagtattttcc |
10503660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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