View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_high_24 (Length: 369)

Name: NF20821_high_24
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_high_24
NF20821_high_24
[»] chr5 (10 HSPs)
chr5 (16-352)||(41702669-41703005)
chr5 (56-186)||(41469655-41469785)
chr5 (115-186)||(41499628-41499699)
chr5 (124-185)||(41509401-41509462)
chr5 (105-185)||(41499525-41499605)
chr5 (118-186)||(41515440-41515508)
chr5 (124-186)||(41519624-41519686)
chr5 (216-259)||(41469881-41469924)
chr5 (216-267)||(41524534-41524585)
chr5 (180-220)||(41469833-41469873)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 41703005 - 41702669
Alignment:
Q  16 ttctttactgtttcctccaattctccaattttaatctgtgattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttct 115  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703005 ttctttactgtttcctccaattctccaattttactctgtaattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttct 41702906  T
Q  116 ttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702905 ttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttt 41702806  T
Q  216 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaacctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702805 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaacctt 41702706  T
Q  316 gaaagtatctccatgtcaagctgctctttaagcttta 352  Q
    |||||||||||||||||||||||||||||||||||||    
T  41702705 gaaagtatctccatgtcaagctgctctttaagcttta 41702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 41469655 - 41469785
Alignment:
Q  56 attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac 155  Q
    ||||||||  ||||||||||||  ||||||||||||| ||||||||||||||||||||||| | ||| || ||||| |||||||||| ||||||||||||    
T  41469655 attcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaac 41469754  T
Q  156 aatctttcttcttaacacatcaacttcattg 186  Q
    ||||||| ||||||  |||||||||||||||    
T  41469755 aatctttgttcttattacatcaacttcattg 41469785  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 41499628 - 41499699
Alignment:
Q  115 tttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 186  Q
    ||||| ||| |||||||||||| ||||   |||||||||||||||||| ||||||||||| |||||||||||    
T  41499628 tttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacaccaacttcattg 41499699  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 41509401 - 41509462
Alignment:
Q  124 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 185  Q
    |||||||||||||||||||| |||||||||||  ||||| ||||||||| ||||| ||||||    
T  41509401 ttcaactccaaaacttcattgtctaattcaaccttcttttttcttaacatatcaagttcatt 41509462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 41499525 - 41499605
Alignment:
Q  105 ccattttttctttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 185  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||| | ||||| ||  ||||| |||| ||| ||||||    
T  41499525 ccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcatt 41499605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 41515440 - 41515508
Alignment:
Q  118 aacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 186  Q
    |||||| |||||||||||| ||||  |||||||||| || |||||||||||||||||| || |||||||    
T  41515440 aacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattg 41515508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 41519624 - 41519686
Alignment:
Q  124 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 186  Q
    |||||||||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||||    
T  41519624 ttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattg 41519686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 41469881 - 41469924
Alignment:
Q  216 tctatttaccttaacctctttcaagagagcttcataattttctt 259  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||    
T  41469881 tctatttaccttaacttctttcaaaagagcttcataactttctt 41469924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 41524534 - 41524585
Alignment:
Q  216 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttc 267  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||| ||||||    
T  41524534 tctattcaccttaacttctttcaaaagagcttcataactttcttgaactttc 41524585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 41469833 - 41469873
Alignment:
Q  180 ttcattgttcttcttttctaacgcttcattactttttctat 220  Q
    |||||||||||||||||||||| || ||||| |||||||||    
T  41469833 ttcattgttcttcttttctaactctacattagtttttctat 41469873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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