View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_high_36 (Length: 320)

Name: NF20821_high_36
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_high_36
NF20821_high_36
[»] chr6 (4 HSPs)
chr6 (150-301)||(10007103-10007254)
chr6 (5-149)||(10006991-10007135)
chr6 (37-149)||(10000326-10000438)
chr6 (60-131)||(10014646-10014717)
[»] chr3 (2 HSPs)
chr3 (259-294)||(4252526-4252561)
chr3 (258-300)||(40777051-40777093)
[»] chr1 (2 HSPs)
chr1 (259-294)||(39714780-39714815)
chr1 (242-286)||(44486167-44486211)
[»] chr2 (1 HSPs)
chr2 (261-294)||(18825382-18825415)
[»] chr8 (1 HSPs)
chr8 (259-299)||(22268930-22268970)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 150 - 301
Target Start/End: Original strand, 10007103 - 10007254
Alignment:
Q  150 tggatgaaacaggaaattgagcaccaaggtaccatttatcagcaaatcaaatggtaagtttattcccataaacttacttaggttgatttgaaggtgttgg 249  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10007103 tggatgaaaccggaaattgagcaccaaggtaccatttatcagcaaatcaaagggtaagtttattcccataaacttacttaggttgatttgaagctgttgg 10007202  T
Q  250 tttagaaaattggagtgtcctcctctcaaggtctcaagtttgattatctctg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10007203 tttagaaaattggagtgtcctcctctcaaggtctcaagtttgattatctctg 10007254  T

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Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 10006991 - 10007135
Alignment:
Q  5 agcaacactaaggaaaaccccaaaatttatcaatcattagggccttgtaagacttcaattagttgagtggttcacatatttccaaatattgctatagaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10006991 agcaacactaaggaaaaccccaaaatttatcaatcattagggccttgtaagacttcaattagttgagtggttcacatatttccaaatattgctatagaga 10007090  T
Q  105 atgaaatcaaaatggatgaaacatgaaattgtgcaccaatgtacc 149  Q
    ||||||||||||||||||||||  ||||||| ||||||| |||||    
T  10007091 atgaaatcaaaatggatgaaaccggaaattgagcaccaaggtacc 10007135  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 10000326 - 10000438
Alignment:
Q  37 atcattagggccttgtaagacttcaattagttgagtggttcacatatttccaaatattgctatagagaatgaaatcaaaatggatgaaacatgaaattgt 136  Q
    ||||||||||||| ||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  10000326 atcattagggcctggtaaggctacaattagttgagtggttcacaaatttcaaaatattgctatagagaatgaaatcaaaatggatgaaacatgaaattga 10000425  T
Q  137 gcaccaatgtacc 149  Q
    || | ||||||||    
T  10000426 gctctaatgtacc 10000438  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 10014646 - 10014717
Alignment:
Q  60 caattagttgagtggttcacatatttccaaatattgctatagagaatgaaatcaaaatggatgaaacatgaa 131  Q
    ||||||||||  ||||||| | ||| | |||||||| |||||||||||||||||||||||||||| ||||||    
T  10014646 caattagttgcctggttcatagattacaaaatattgttatagagaatgaaatcaaaatggatgaaccatgaa 10014717  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 4252561 - 4252526
Alignment:
Q  259 ttggagtgtcctcctctcaaggtctcaagtttgatt 294  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4252561 ttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 300
Target Start/End: Original strand, 40777051 - 40777093
Alignment:
Q  258 attggagtgtcctcctctcaaggtctcaagtttgattatctct 300  Q
    |||||||||| ||||||||||||||||| |||||||| |||||    
T  40777051 attggagtgtgctcctctcaaggtctcaggtttgattctctct 40777093  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 39714815 - 39714780
Alignment:
Q  259 ttggagtgtcctcctctcaaggtctcaagtttgatt 294  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39714815 ttggagtgtgctcctctcaaggtctcaagtttgatt 39714780  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 44486211 - 44486167
Alignment:
Q  242 ggtgttggtttagaaaattggagtgtcctcctctcaaggtctcaa 286  Q
    ||||||||||| |||  ||||||||| ||||||||||||||||||    
T  44486211 ggtgttggtttggaaccttggagtgtgctcctctcaaggtctcaa 44486167  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 18825382 - 18825415
Alignment:
Q  261 ggagtgtcctcctctcaaggtctcaagtttgatt 294  Q
    ||||||| ||||||||||||||||||||||||||    
T  18825382 ggagtgtgctcctctcaaggtctcaagtttgatt 18825415  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 22268970 - 22268930
Alignment:
Q  259 ttggagtgtcctcctctcaaggtctcaagtttgattatctc 299  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  22268970 ttggagtgtgctcttctcaaggtctcaagtttgattttctc 22268930  T

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