View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20821_high_38 (Length: 307)
Name: NF20821_high_38
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 37556008 - 37555729
Alignment:
| Q |
18 |
ctaacctgaatgggagttcttccattaaagaaaggtttattatccacacccagtgaaatacattctttattcatgaaacctgaactgttgatgtaaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
37556008 |
ctaacctgaatgggagttcttccattaaagaaaggtttattatccacacccagtgaaatacattctttattcatgaaacctgaactattggtgtaaaaga |
37555909 |
T |
|
| Q |
118 |
tatcaggatttgattcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatgacattatagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37555908 |
tatcaggatttgattcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatgacattatagc |
37555809 |
T |
|
| Q |
218 |
ttgtaacttaagtttgcaatcctgaacaagctgaaacaaggacctataagctgaccaatcatactgctgaggaccctttg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37555808 |
ttgtaacttaagtttgcaatcctgaacaagctgaaacaaggacctataagctgaccaatcatactgctgaggaccctttg |
37555729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 15502654 - 15502543
Alignment:
| Q |
109 |
tgtaaaagatatcaggatttgattcaccaacttcaagtacccatttaggtaatggaatggaaacagaatctccaatattccctccacattgatgaaatga |
208 |
Q |
| |
|
|||| ||||||||||||| |||||| |||| |||||||||||||| || ||||| ||| |||| ||| || | ||| |||||||||||||| ||||| |
|
|
| T |
15502654 |
tgtagaagatatcaggatctgattctccaatgtcaagtacccattttggcaatgggatgttaacaacatcacctacatttcctccacattgatggaatga |
15502555 |
T |
|
| Q |
209 |
cattatagcttg |
220 |
Q |
| |
|
||| |||||||| |
|
|
| T |
15502554 |
catgatagcttg |
15502543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University