View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_41 (Length: 296)
Name: NF20821_high_41
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_41 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 2358681 - 2358977
Alignment:
| Q |
1 |
ttaaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagcagaagtatacattatgctgttcatgctgacatgcatgtgcat |
100 |
Q |
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| T |
2358681 |
ttaaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagtagaagtatacatcatgctgttcatgctgacatgcatgtgcat |
2358780 |
T |
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| Q |
101 |
gtatcatgatgttnnnnnnnn-caaacaaaattgctattgagtcacagataatacagtagtagataaaaacaaaaggtgtgtggcttgtaaaattcatcc |
199 |
Q |
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| T |
2358781 |
gtatcatgatgttaaagaaaaacaaacaaaattgctattgagtcacagataatacagtagtagataaaaacaaaaggtgtgtggcttgtcaaattcatcc |
2358880 |
T |
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| Q |
200 |
ttaatgagttgactcaactgtcaaattcatccttaatcatgtaggaagctctcaaataaatttttgaggttataagtatttcagaaagatctttgga |
296 |
Q |
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| T |
2358881 |
ttaatgagttgactcaactgtcaaattcatccttaatcatgtaggaagctctcaaataaatttttgaggttataagtatttcagaaagatctttgga |
2358977 |
T |
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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 31643294 - 31643470
Alignment:
| Q |
3 |
aaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagcagaagtatacattatgctgttcatgctgacatgcatgtgcatgt |
102 |
Q |
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|||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
31643294 |
aaattggaaatttt-atttaatttttttacacatgatgttgtaaaaatagtata-----------catcatgctgttcatgctgacatgcatgtgcatgt |
31643381 |
T |
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| Q |
103 |
atcatgatgttnnnnnnnn-caaacaaaattgctattgagtcacagataatacag--tagtagataaaaacaaaaggtgtgtggcttgt |
188 |
Q |
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| T |
31643382 |
atcatgatgttaaaaaaaaacaaacaaaattgctattgagtcacagataatacagtatagtagatagaaacaaaaggtgtgtggattgt |
31643470 |
T |
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