View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_50 (Length: 275)
Name: NF20821_high_50
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 12015233 - 12015478
Alignment:
| Q |
9 |
acatcatcatagaccacaatgaactaaggaaaatacttgttatgatctttgacaaactagatgctttttaatagcattaaaagttcactacagcacaaac |
108 |
Q |
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| T |
12015233 |
acatcctcatagaccacaatgaactaaggaaaatacttgttatgatctttgacaaactagatgctttttaatagcattaaaagttcactacagcacaacc |
12015332 |
T |
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| Q |
109 |
gcttgattaagtcactcaatatcatttaaattttgcaaatatagtcattctacaatgtaacctgaagtgtttttctgacattgatacctctaacttgtgc |
208 |
Q |
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| T |
12015333 |
gcttgattaagtcactcaatatcatttaaattctgcaaatatagtcattctacaatgtaacctgaagtatttttctgacattgatacctctaacttgtgc |
12015432 |
T |
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| Q |
209 |
tgctaagaatatggtgatagattttatattacactttgggattact |
254 |
Q |
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| T |
12015433 |
tgctaagaatatggtgatagattttatattacactttgggattact |
12015478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 3031092 - 3030992
Alignment:
| Q |
24 |
acaatgaactaaggaaaatacttgttatgatctttgacaaactagatgctttttaatagcattaaaagttcactacagcacaaacgcttgattaagtcac |
123 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||| || || ||||||||||||| ||||| |||| ||||||| |||||||| |
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| T |
3031092 |
acaatgaaccaaggaaaatactagttatgatctttgacaaactagatgcttattgattacattaaaagttcagtacagtacaatcgcttgactaagtcac |
3030993 |
T |
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| Q |
124 |
t |
124 |
Q |
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| T |
3030992 |
t |
3030992 |
T |
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