View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_53 (Length: 272)
Name: NF20821_high_53
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_53 |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 1669699 - 1669447
Alignment:
| Q |
18 |
taaaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtgagctttgaagttttttcacatggttgaaattataggattggatgcat |
117 |
Q |
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| T |
1669699 |
taaaacacaagttcctgcattgaaaacagggtgtttgcatatttaatgaagtgagctttgaagttttttcacatggttgaaattataggattggatgcat |
1669600 |
T |
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| Q |
118 |
tataaaaaggataacttgatataatacatttaagtaatgagactctaaccaactatgatgttgtgctgacatgat--------ccaacactcttatttat |
209 |
Q |
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| T |
1669599 |
tataaaaaggataacttgatata--acatttaagtaatgagactctaaccaactatgatgctgtgctgacatgatatactaacccaatactcttatttat |
1669502 |
T |
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| Q |
210 |
atactaatatgtatttactcaatatcaagcttagtataacttgtacagttcatct |
264 |
Q |
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| T |
1669501 |
aaattaatatgtgttcggtcaatatcaagcttagtataacttgtatagttcatct |
1669447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 78 - 264
Target Start/End: Original strand, 1888501 - 1888695
Alignment:
| Q |
78 |
aagttttttcacatggttgaaattataggattggatgcattataaaaaggataacttgatataatacatttaagtaatgagactctaaccaactatgatg |
177 |
Q |
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| T |
1888501 |
aagttttttcacatggttgaaattataggattggatgaattataaaaaggataacttgatataatacatttaagtaatgagactctaaccaactatgatg |
1888600 |
T |
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| Q |
178 |
ttgtgctgacatgat--------ccaacactcttatttatatactaatatgtatttactcaatatcaagcttagtataacttgtacagttcatct |
264 |
Q |
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| T |
1888601 |
ttgtgctgacatgatatactaacccaatactcttatttataaactaatatgtgtttagtcaatgtcaagcttagtataacttgtatagttaatct |
1888695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 1665044 - 1664938
Alignment:
| Q |
149 |
aagtaatgagactctaaccaactatgatgttgtgctgacatgat--------ccaacactcttatttatatactaatatgtatttactcaatatcaagct |
240 |
Q |
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| T |
1665044 |
aagtaatgagactataaccaactatgatgttgtgccgacatgatatactaacccaatactcttatttatatactaatatgtgtttagtcaatttcaagct |
1664945 |
T |
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| Q |
241 |
tagtata |
247 |
Q |
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||||||| |
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| T |
1664944 |
tagtata |
1664938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 1665147 - 1665096
Alignment:
| Q |
20 |
aaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
71 |
Q |
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| T |
1665147 |
aaacataagctcctgccttgaaaacagggtgtctgcatattgaatgaagtga |
1665096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 5997669 - 5997792
Alignment:
| Q |
69 |
tgagctttgaagttttttcacatggttgaaattatagg-attggatgcattataaaaaggataacttgatataatacatttaagtaatgagactctaacc |
167 |
Q |
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||||||||||||||||||||| |||||||||||| ||| ||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
5997669 |
tgagctttgaagttttttcacttggttgaaattacagggattggatgc-tcataaaaaggataacaggatataatacat--aagtaatgagactctaacc |
5997765 |
T |
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| Q |
168 |
aactatgatgttgtgctgacatgatcc |
194 |
Q |
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| T |
5997766 |
aactatgatgttatgctgacatgatcc |
5997792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 5998264 - 5998300
Alignment:
| Q |
228 |
tcaatatcaagcttagtataacttgtacagttcatct |
264 |
Q |
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| T |
5998264 |
tcaatatcaagtttagtataacttgtacagttcatct |
5998300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 7485 - 7379
Alignment:
| Q |
149 |
aagtaatgagactctaaccaactatgatgttgtgctgacatgat--------ccaacactcttatttatatactaatatgtatttactcaatatcaagct |
240 |
Q |
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| T |
7485 |
aagtaatgagactataaccaactatgatgttgtgccgacatgatatactaacccaatactcttatttatatactaatatgtgtttagtcaatttcaagct |
7386 |
T |
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| Q |
241 |
tagtata |
247 |
Q |
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||||||| |
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| T |
7385 |
tagtata |
7379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 7588 - 7537
Alignment:
| Q |
20 |
aaacacaagttcctgcattgaaaacagggtgtctgcatattgaatgaagtga |
71 |
Q |
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| T |
7588 |
aaacataagctcctgccttgaaaacagggtgtctgcatattgaatgaagtga |
7537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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