View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_high_57 (Length: 254)
Name: NF20821_high_57
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_57 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 2505150 - 2505373
Alignment:
| Q |
14 |
caattacaatcaagactatagtgaagaaagattaatacagaaggccatacaaagagtgcttgttattcaacacacaaaatcaaatgaaagcatcggcatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
2505150 |
caattacaatcaagactatagtgaagaaagattaatacagaaggccatacaaagagggcttgttattcaatacacaa--tcaaatgaaagcatcggcatt |
2505247 |
T |
|
| Q |
114 |
cattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtctt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505248 |
cattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatatgccaaccaaggcttcagggcctttctcaagaccctcagctatgtctt |
2505347 |
T |
|
| Q |
214 |
ctacatacacaaccttcccttctctg |
239 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2505348 |
ctacatacacaaccttcccttctctg |
2505373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 2511768 - 2511994
Alignment:
| Q |
14 |
caattacaatcaagactatagtgaagaaagattaatacagaaggccatacaaagagtgcttgttattcaacacacaaaa-tcaaatgaaagcatcggcat |
112 |
Q |
| |
|
|||||||| |||| ||||| |||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
2511768 |
caattacagtcaacactatggtgaaggaagattaacacaaaaggccatacaaagagggcttgttattcaacacaaaaaaatcaaatgaaagcatctgcat |
2511867 |
T |
|
| Q |
113 |
tcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
2511868 |
tcattcacgagcaacaacaagcacttgtttgccaacatttttaccactaaatatgccaaccaaagctgcaggacctttctcaagaccctcagctatgtct |
2511967 |
T |
|
| Q |
213 |
tctacatacacaaccttcccttctctg |
239 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
2511968 |
tccacatacacaaccttcccttctctg |
2511994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 2429874 - 2429748
Alignment:
| Q |
112 |
ttcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtc |
211 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||| |||||||||| |||||||| | |||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
2429874 |
ttcactcatgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtc |
2429775 |
T |
|
| Q |
212 |
ttctacatacacaaccttcccttctct |
238 |
Q |
| |
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||| |||||||||||||| |||||||| |
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|
| T |
2429774 |
ttccacatacacaacctttccttctct |
2429748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 2516141 - 2516264
Alignment:
| Q |
115 |
attcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttc |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| || ||||| || |||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
2516141 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccgctaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
2516240 |
T |
|
| Q |
215 |
tacatacacaaccttcccttctct |
238 |
Q |
| |
|
|||||||||||| | |||||||| |
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|
| T |
2516241 |
cacatacacaaccctaccttctct |
2516264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 2432869 - 2432730
Alignment:
| Q |
99 |
gaaagcatcggcattcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagac |
198 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||||||||| |||||||| ||||| ||| |||| ||| || |||| || |||||||||| |
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| T |
2432869 |
gaaagcatctgcattcattcatgagcaacaacaaccacttgtttaccaacattgcgaccactgtataggccaatcaatgcagcaggaccattctcaagac |
2432770 |
T |
|
| Q |
199 |
cctcagctatgtcttctacatacacaaccttcccttctct |
238 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||| |
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|
| T |
2432769 |
cctcagctatgtcttccacatacacaatctttccttctct |
2432730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 2436229 - 2436091
Alignment:
| Q |
100 |
aaagcatcggcattcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagacc |
199 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||| ||||||||| |||||||| |||||| ||| |||| ||| || |||| || ||||||||||| |
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|
| T |
2436229 |
aaagcatatgcattcattcatgagcaacagcaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagacc |
2436130 |
T |
|
| Q |
200 |
ctcagctatgtcttctacatacacaaccttcccttctct |
238 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
2436129 |
ctcagctatgtcttccacatacacaacctttccttctct |
2436091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 2496568 - 2496692
Alignment:
| Q |
115 |
attcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttc |
214 |
Q |
| |
|
|||| |||||||| |||| ||||||||| |||||||| |||||| ||| |||| ||||||| ||||||| |||||||||||||||| ||||||||| |
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| T |
2496568 |
attcccgagcaacgacaaccacttgtttaccaacattgcgaccactatataggccaatcaaggctgcagggccattctcaagaccctcagttatgtcttc |
2496667 |
T |
|
| Q |
215 |
tacatacacaaccttcccttctctg |
239 |
Q |
| |
|
|||||||||| |||||| |||||| |
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|
| T |
2496668 |
aacatacacaatcttcccatctctg |
2496692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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