View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20821_high_68 (Length: 240)
Name: NF20821_high_68
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_high_68 |
 | |
|
| [»] scaffold1444 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17945454 - 17945228
Alignment:
| Q |
1 |
gttggattctattgccaccagatcaacgcgacaacgacttacatggttccattggtggcctctgatggaaccaaatccaaggcactaactatctgccacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17945454 |
gttggattctattgccaccagatcaacgcgacaacgacttacatggttccattggtggcctctgatggaactaaatccaaggcactaactatctgccacc |
17945355 |
T |
|
| Q |
101 |
atgatacaagaggtatggatcctaatatgctctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17945354 |
atgatacaagaggtatggatcctaatatgctctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgc |
17945255 |
T |
|
| Q |
201 |
ctgggtacccaacgatgttgtgagtga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17945254 |
ctgggtacccaacgatgttgtgagtga |
17945228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 17956447 - 17956236
Alignment:
| Q |
6 |
attctattgccaccagatcaacgcgacaacgacttacatggttccattggtggcctctgatggaaccaaatccaaggcactaactatctgccaccatgat |
105 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
17956447 |
attctattgccaccaagtcaatgcgacaacaacttacatggttccattggtggcatccgatggaaccaaatctaaggcactaacaatctgtcaccatgat |
17956348 |
T |
|
| Q |
106 |
acaagaggtatggatcctaatatgctctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctggg |
205 |
Q |
| |
|
|| ||||||||||||||||| |||| || || |||||| |||| ||||||||||||||||||||||||||||| ||||||||||| || |||| |||| |
|
|
| T |
17956347 |
actcgaggtatggatcctaatgtgctttacgatgttctcaaagttaagcctggaactgtccctgtttgccattttattggcaacaaggccgttgcttggg |
17956248 |
T |
|
| Q |
206 |
tacccaacgatg |
217 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
17956247 |
taccgaacgatg |
17956236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 17117328 - 17117145
Alignment:
| Q |
39 |
ttacatggttccattggtggcctctgatggaaccaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcctaatatgctctatgaa |
138 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||| | |||||| | ||||| || ||||||||||||||||||||| ||||| || |||||| | |
|
|
| T |
17117328 |
ttacatggtgccattggtggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataag |
17117229 |
T |
|
| Q |
139 |
gttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctgggtacccaacgatgttgtg |
222 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||||| ||||||||||| || ||||| |||||||| || |||||||| |
|
|
| T |
17117228 |
gttctcaaagtcaagccaggaactgtccctatttgccattttattggcaacaaggccattgcttgggtacctaataatgttgtg |
17117145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 17107502 - 17107669
Alignment:
| Q |
39 |
ttacatggttccattggtggcctctgatggaaccaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcctaatatgctctatgaa |
138 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| ||| | |||||||||||||| || ||||||||||||||||| ||| ||||| || | || |||||| |
|
|
| T |
17107502 |
ttacatggtgctattggtggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaa |
17107601 |
T |
|
| Q |
139 |
gttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctgggt |
206 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
17107602 |
cttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
17107669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 17986614 - 17986454
Alignment:
| Q |
1 |
gttggattctattgccaccagatcaacgcgacaacgacttacatggttccattggtggcctctgatggaaccaaatccaaggcactaactatctgccacc |
100 |
Q |
| |
|
|||| ||| ||||||||||| |||| || ||| | || ||||| ||||| || ||||||||||||||||| ||| | ||||||||||| || ||||||| |
|
|
| T |
17986614 |
gttgtattttattgccaccaagtcaatgcaacatcaacatacatagttcctttagtggcctctgatggaactaaagcgaaggcactaacaatatgccacc |
17986515 |
T |
|
| Q |
101 |
atgatacaagaggtatggatcctaatatgctctatgaagttctccaagtcaagcctggaac |
161 |
Q |
| |
|
|||| || ||||||||||||||| || |||| |||||||||||| |||||||||||||||| |
|
|
| T |
17986514 |
atgacacgagaggtatggatcctgatgtgctttatgaagttctcaaagtcaagcctggaac |
17986454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 17004318 - 17004395
Alignment:
| Q |
37 |
acttacatggttccattggtggcctctgatggaaccaaatccaaggcactaactatctgccaccatgatacaagaggt |
114 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17004318 |
acttacatggtgccattggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggt |
17004395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 17999305 - 17999193
Alignment:
| Q |
97 |
caccatgatacaagaggtatggatcctaatatgctctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagcta |
196 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| ||||| ||||||||||| |||||||||| |||||| ||||||| |||||||| |||| ||||| ||| |
|
|
| T |
17999305 |
caccatgacacaagaggtatgaatccgaatttgctcgatgaagttctcaaagtcaagccaggaactatccctgtctgccattttgttggtaacaaggctg |
17999206 |
T |
|
| Q |
197 |
ttgcctgggtacc |
209 |
Q |
| |
|
|||| ||| |||| |
|
|
| T |
17999205 |
ttgcttggttacc |
17999193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 1 - 94
Alignment:
| Q |
117 |
ggatcctaatatgctctatgaagttctccaagtcaagcctggaactgtccctgtttgccatttcattggcaacaaagctattgcctgggtaccc |
210 |
Q |
| |
|
||||||| || ||||||| ||| ||||| ||||||||||||||||||||||| |||||||||| |||| ||||| || ||||| ||||||||| |
|
|
| T |
1 |
ggatcctgatgtgctctacgaaattctcaaagtcaagcctggaactgtccctatttgccattttgttggtaacaaggccattgcttgggtaccc |
94 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University