View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_1 (Length: 901)
Name: NF20821_low_1
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_1 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 753; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 18 - 901
Target Start/End: Original strand, 8459028 - 8459907
Alignment:
| Q |
18 |
gtatgaggatgcagaatctattagagaagctgctccagattgtcttaataaagcttatgaaaccccttcttttgatgaaaatactttgcttccaaaatat |
117 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459028 |
gtatgaggatgcagaatctataagagaagctgctccagattgtcttaataaagcttatgaaaccccttcttttgatgaaaatactttgcttccaaaatat |
8459127 |
T |
|
| Q |
118 |
gctcatgatgttgagaaagttgctgatattattttagttatctcaaatattttgagacattagaatacttgtagnnnnnnnnnnnnnnnnctgaggaaga |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8459128 |
gctcatgatgttgagaaagttgctgatattattttagttatctcaaatattttgagacattagaatacttgtagttttttttttt------tgaggaaga |
8459221 |
T |
|
| Q |
218 |
atatttactcttttataatttctatttcttgaataatgttgcaacatatggaccaatttggacattaataacatcttgcaaatataaagtttcatgagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8459222 |
atatttactcttttataatttctatttcttgaataatgttgcaacatatggatcaatttggacattaataaaatcttgcaaatataaagtttcatgagtt |
8459321 |
T |
|
| Q |
318 |
taacaataattgattgaatatgtttgatttttgtctcaattttttaggcaatttatactagtactctattgtttctttgatggagatttaaataaattat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459322 |
taacaataattgattgaatatgtttgatttttgtctcaattttttaggcaatttataccagtactctattgtttctttgatggagatttaaataaattat |
8459421 |
T |
|
| Q |
418 |
ggttttgaatctatggtttgtagaccatgctacatctttcaacgagattatgtttatagtcatttgttgcgttatttgaaagattaagaatggcatggtg |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8459422 |
ggttttgaatctatggtttgtagaccatgctacatctttcaacgagattatgtttgtagtcatttgttgcgttatctgaaagattaagaatggcatggtg |
8459521 |
T |
|
| Q |
518 |
ttcaacaaccgtaaatgaattatctcgcagtgacttaacaacattcattcttatatagctcttttccttgaaggttctaggtactcctaccattcaaaaa |
617 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459522 |
ttcaacaaccgtaaatgaattatcttgcagtgacttaacaacattcattcttatatagctcttttccttgaaggttctaggtactcctaccattcaaaaa |
8459621 |
T |
|
| Q |
618 |
ccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaactctttcaacgatcatggaa---tcggctttggtg |
714 |
Q |
| |
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| T |
8459622 |
ccgacgtgtgaggccagttgaattcctcctcctgaagacaacataaaagttaatatggacgacaactctttcaacgatcatggaagatgtggctttggtg |
8459721 |
T |
|
| Q |
715 |
gcatcttgcgcaacaacaatggaaactggttatttgggttcttgctctctaattccttatgcatcgaacttcatacaattttaaatggtctcaaaattgc |
814 |
Q |
| |
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| T |
8459722 |
gcatcttgcg-aacaacaatggaaactggttatttgggttcttgctctctaattccttatgcgtcgaacttcatgcaattttaaatggtctcaaaattgc |
8459820 |
T |
|
| Q |
815 |
tcaaactagacgattgagaaataatatcgttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactcca |
901 |
Q |
| |
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| T |
8459821 |
tcaaactagacaattgagaaatattatcgttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactcca |
8459907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 8463725 - 8464229
Alignment:
| Q |
18 |
gtatgaggatgcagaatctattagagaagctgctccagattgtcttaataaagcttatgaaaccccttcttttgatgaaaatactttgcttccaaaatat |
117 |
Q |
| |
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||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| || ||||||||||||||| |||| |||||||||||||||| |
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| T |
8463725 |
gtatgaggatgcagaatctattagagaagttattccagattgtcttaatggagcttatggaaacccttcttttgatgataatagtttgcttccaaaatat |
8463824 |
T |
|
| Q |
118 |
gctcatgatgttgagaaagttgctgatattattttagttatctcaaatattttgagacattagaatacttgtagnnnnnnnnnnnnnnnnctgaggaaga |
217 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8463825 |
gctcatgatgttgagaaagttgctgagattattttagctatctcaaatattttgagacattagaatacttgtagttttttttcttttt---tagggaaga |
8463921 |
T |
|
| Q |
218 |
atatttactcttttataatttctatttcttgaataatgttgcaacatatggaccaatttggacattaataacatcttgcaaatataaagtttcatgagtt |
317 |
Q |
| |
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|||||||||| |||||||||| ||||| |||||| ||||||||||||||||| |||| | ||||||||||| |||||||||||||| |
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| T |
8463922 |
atatttactcatttataatttgtatttgttgaatgatgttgcaacatatggatcaatctagacattaataa---------------aagtttcatgagtt |
8464006 |
T |
|
| Q |
318 |
taacaataattgattgaatatgtttgatttttgtctcaattttttaggcaatttatactagtactctattgtttctttgatggagatttaaataaattat |
417 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8464007 |
tgacaataattgattgaatatgtgtgatttttgtctcaatgttttaggcaattcatactagtactctaatgtttctttgatggagatttaaataaattat |
8464106 |
T |
|
| Q |
418 |
ggttttgaatctatggtttgtagaccatgctacatctttcaacgagattatgtttatagtcatttgttgcgttatttgaaagattaagaatggcatggtg |
517 |
Q |
| |
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||||||||||| ||||||| | ||||||||||||||||| ||||| |||||||||||||||| |||||| ||||| || | || ||||| ||||| | |
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| T |
8464107 |
ggttttgaatccatggttttttgaccatgctacatcttttaacgatattatgtttatagtcacttgttgggttatctg--gcactaggaatgacatggag |
8464204 |
T |
|
| Q |
518 |
ttcaacaaccgtaaatgaattatct |
542 |
Q |
| |
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|||||| || ||||||||||||||| |
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| T |
8464205 |
ttcaacgactgtaaatgaattatct |
8464229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 803 - 901
Target Start/End: Original strand, 8466079 - 8466177
Alignment:
| Q |
803 |
tctcaaaattgctcaaactagacgattgagaaataatatcgttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactcca |
901 |
Q |
| |
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|||||| ||||||||| || | |||| || |||| |||| || ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8466079 |
tctcaagattgctcaatctgaaagattcaggaatattatcattaaattagattccactctaacagttgatttcacttctcatgcaacttctcaactcca |
8466177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 374
Target Start/End: Original strand, 8477667 - 8477743
Alignment:
| Q |
297 |
aaatataaagtttcatgagtttaacaataattgattgaatatgtttgatttttgtctcaattttttaggcaatttata |
374 |
Q |
| |
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|||||| |||||| |||||||||||||||||||||||| ||| | | ||||||| ||| |||||| |||||||||| |
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| T |
8477667 |
aaatatgaagttttttgagtttaacaataattgattgaacatg-tgcaattttgtcacaaatttttatgcaatttata |
8477743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 584 - 756
Target Start/End: Original strand, 32513374 - 32513549
Alignment:
| Q |
584 |
cttgaaggttctaggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaac |
683 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||| ||||||| | |||||||| || || |||||||| ||| ||||| ||| |||| | | | |
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| T |
32513374 |
cttgcaggtactaggtactcctaccattcaaaaaccgacatgtgaggttacttggattcatcttcttgaagacatcattaaagtgaatgtggatggaagc |
32513473 |
T |
|
| Q |
684 |
tctttcaacgatcatgga--atc-ggctttggtggcatcttgcgcaacaacaatggaaactggttatttgggttct |
756 |
Q |
| |
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||||||||| | | || | ||| |||||||| | ||||||||| ||||||||||| ||| |||| ||||||||| |
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|
| T |
32513474 |
tctttcaacaaccctgaaagatcgggctttggggacatcttgcgtaacaacaatggcgactagttacttgggttct |
32513549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 449 - 754
Target Start/End: Original strand, 23051309 - 23051616
Alignment:
| Q |
449 |
acatctttcaacgagattatgtttatagtcatttgttgcgttatttgaaagattaagaatggcatggtgttcaacaaccgtaaatgaattatctcgcagt |
548 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||| ||||| ||| ||| | |||| | |||||||||| || |||||| |||||||| || | |
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| T |
23051309 |
acatcttccaacgggattatgtttatagtcacttgttgggttatctgatagactcgaaatgacttggtgttcaatgactctaaatggattatctcacatt |
23051408 |
T |
|
| Q |
549 |
gacttaacaacattcattcttatatagctcttttccttgaaggttctaggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctc |
648 |
Q |
| |
|
||||||| || ||||||||||||| | | |||||| | |||| || ||||||||| ||| |||||| || |||||||| | |||||| | ||||| |
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| T |
23051409 |
gacttaagaaaattcattcttatagatccattttcc-agcaggtccttaatactcctacaatttaaaaactgatgtgtgaggtctcttggatccatcctc |
23051507 |
T |
|
| Q |
649 |
ctgaagacaacataaaagttaatatggacgacaactctttcaacgatcatgga--atc-ggctttggtggcatcttgcgcaacaacaatggaaactggtt |
745 |
Q |
| |
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| |||| | |||||||||||| |||| | | ||||||||| ||| |||| ||| |||||| |||||| ||||||||||||||||| |||||| |
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| T |
23051508 |
cgaaagataccataaaagttaaagtggatggaagttctttcaacaatcctggaagatcaagctttgatggcattttgcgcaacaacaatggtgtctggtt |
23051607 |
T |
|
| Q |
746 |
atttgggtt |
754 |
Q |
| |
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| ||||||| |
|
|
| T |
23051608 |
acttgggtt |
23051616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 512 - 734
Target Start/End: Original strand, 25316185 - 25316410
Alignment:
| Q |
512 |
atggtgttcaacaaccgtaaatgaattatctcgcagtgacttaacaacattcatt-cttatatagctcttttccttgaaggttctaggtactcctaccat |
610 |
Q |
| |
|
|||||||||||| | |||||| ||||||| | | || ||||| || ||||||| |||||||| | |||||| ||| | || |||||||||||| |||| |
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| T |
25316185 |
atggtgttcaacgatggtaaatagattatctggaaatgtcttaaaaaaattcatttcttatataacccttttc-ttgcatgtcctaggtactcctgccat |
25316283 |
T |
|
| Q |
611 |
tcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaactctttcaacgatcatggaa---tcggc |
707 |
Q |
| |
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|||||||||| |||||| || ||||||| |||||| |||||||| || ||||||||| |||| | |||||||||| ||| ||||| | ||| |
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| T |
25316284 |
acaaaaaccgatgtgtgaaatcacttggatttctcctcttgaagacacaattaaagttaatgtggatataagctctttcaacaatcctggaaaattaggc |
25316383 |
T |
|
| Q |
708 |
tttggtggcatcttgcgcaacaacaat |
734 |
Q |
| |
|
||||| ||||||||| ||||||||||| |
|
|
| T |
25316384 |
tttgggggcatcttgggcaacaacaat |
25316410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 596 - 692
Target Start/End: Complemental strand, 52729422 - 52729327
Alignment:
| Q |
596 |
aggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaactctttcaac |
692 |
Q |
| |
|
|||||||| |||||| ||||||| || |||||| |||| |||||||||||||||||||| || ||| |||||||| |||| | ||||||||||||| |
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|
| T |
52729422 |
aggtactcttaccatccaaaaactgatgtgtgaagccacttggattcctcctcctgaaggcaccat-taagttaatgtggatgtcaactctttcaac |
52729327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 484
Target Start/End: Complemental strand, 41616852 - 41616799
Alignment:
| Q |
431 |
tggtttgtagaccatgctacatctttcaacgagattatgtttatagtcatttgt |
484 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
41616852 |
tggtctgtagaccatgttacatatttcaactagattatgtttatagtcacttgt |
41616799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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