View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_11 (Length: 533)

Name: NF20821_low_11
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_11
NF20821_low_11
[»] chr5 (5 HSPs)
chr5 (124-517)||(14460424-14460817)
chr5 (284-504)||(40802915-40803134)
chr5 (304-415)||(19151859-19151970)
chr5 (343-517)||(7333513-7333682)
chr5 (347-435)||(6458317-6458405)
[»] chr2 (10 HSPs)
chr2 (124-517)||(1979401-1979794)
chr2 (124-517)||(10733273-10733665)
chr2 (224-517)||(4789509-4789802)
chr2 (173-494)||(24314572-24314891)
chr2 (420-517)||(16107639-16107735)
chr2 (153-472)||(42435870-42436190)
chr2 (198-517)||(24525909-24526228)
chr2 (23-75)||(4791815-4791867)
chr2 (198-517)||(24532580-24532899)
chr2 (36-73)||(4791779-4791816)
[»] chr3 (3 HSPs)
chr3 (124-517)||(8354422-8354815)
chr3 (420-518)||(5700739-5700836)
chr3 (341-430)||(290955-291044)
[»] chr1 (8 HSPs)
chr1 (224-517)||(18548170-18548463)
chr1 (23-119)||(18550445-18550541)
chr1 (291-517)||(12252076-12252304)
chr1 (143-250)||(18168903-18169010)
chr1 (369-496)||(965912-966036)
chr1 (289-510)||(11985790-11986015)
chr1 (420-477)||(2980653-2980709)
chr1 (330-429)||(18169077-18169173)
[»] chr7 (2 HSPs)
chr7 (148-507)||(12818005-12818369)
chr7 (291-517)||(6015340-6015568)
[»] chr8 (3 HSPs)
chr8 (395-517)||(26588401-26588523)
chr8 (23-119)||(26589166-26589263)
chr8 (142-472)||(11405288-11405618)
[»] chr6 (6 HSPs)
chr6 (173-506)||(19143909-19144241)
chr6 (173-494)||(19101564-19101884)
chr6 (23-119)||(32934415-32934511)
chr6 (331-481)||(5090812-5090963)
chr6 (35-119)||(7733411-7733495)
chr6 (420-517)||(24585975-24586071)
[»] chr4 (1 HSPs)
chr4 (215-260)||(17354733-17354778)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 124 - 517
Target Start/End: Complemental strand, 14460817 - 14460424
Alignment:
Q  124 gcttaataatcgattcacggaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14460817 gcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 14460718  T
Q  224 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||     
T  14460717 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaaggatattcgttcatgtg 14460618  T
Q  324 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14460617 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 14460518  T
Q  424 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14460517 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagat 14460424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 284 - 504
Target Start/End: Complemental strand, 40803134 - 40802915
Alignment:
Q  284 aatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaa 383  Q
    ||||||||||||||| || |||||||||||||||  ||| |||| | ||||||||| | ||||||||||||||||||||||| | | |||||||||||||    
T  40803134 aatcaacttgaaaatgatgtcatggatgttcgttt-tgtcaacaatgttctaatttgggtgggattagtgatctttcaagaatgtttgtggaaactagaa 40803036  T
Q  384 gacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatt 483  Q
     ||||| || | |||||||||  || ||||||||||||||||||||| |||| |  |||   | |||||  ||||||| |||||||||| ||||||| ||    
T  40803035 aacatactgttgatccaatggaatacttacttttgaagttagcattatttttgcaagtgaaaaatgcaaacgttgaaatgagtttctcttctatgaattt 40802936  T
Q  484 tgtgaagaatcaaatgcgcaa 504  Q
    |||||||||||| || |||||    
T  40802935 tgtgaagaatcagatacgcaa 40802915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 19151970 - 19151859
Alignment:
Q  304 catggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatg 403  Q
    |||||||||||||||  || || | |||||||| |||||| |||||||| |||||||||||| |||||||||||| |||| |||| ||||||||||||||    
T  19151970 catggatgttcgttctagtgaataattttctaacttagataggattagtaatctttcaagaatgatggtggaaacaagaaaacatgttgcttatccaatg 19151871  T
Q  404 gtgtatttactt 415  Q
    ||||||||||||    
T  19151870 gtgtatttactt 19151859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 343 - 517
Target Start/End: Original strand, 7333513 - 7333682
Alignment:
Q  343 tgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtg 442  Q
    |||||||| |||||||||||     ||||||||||| |||| |||| ||| |||||||||||| ||||||||||| |||||| || | |||||  | |||    
T  7333513 tgggattactgatctttcaa-----atggtggaaacaagaaaacatgttgtttatccaatggtatatttacttttaaagttatcactgcttttgtcggtg 7333607  T
Q  443 gctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    || | ||||| ||||||||| | | ||||| ||||||||| |||||||||| || |||||||||| || ||||||    
T  7333608 gccaatgcaattgttgaaagaaatctctctactatgaaatatgtgaagaatgaattgcgcaaccaaataggagat 7333682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 435
Target Start/End: Complemental strand, 6458405 - 6458317
Alignment:
Q  347 attagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattactttt 435  Q
    |||||||||||||  | || | ||||||||| |||||   |||||| |||||| ||| ||||||||| ||  |||||||||||||||||    
T  6458405 attagtgatcttttgaaaatgttggtggaaattagaaagtatattgtttatcctatgatgtatttacattaaaagttagcattactttt 6458317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 124 - 517
Target Start/End: Original strand, 1979401 - 1979794
Alignment:
Q  124 gcttaataatcgattcacggaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979401 gcttaataatcgattcaccgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 1979500  T
Q  224 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  1979501 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcaaggatgttcgttcatgtg 1979600  T
Q  324 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1979601 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgtttatccaatggtgtatttacttttgaagtt 1979700  T
Q  424 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1979701 agcattacttttacctatggctactgcaaccgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagat 1979794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 124 - 517
Target Start/End: Original strand, 10733273 - 10733665
Alignment:
Q  124 gcttaataatcgattcacggaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 223  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10733273 gcttaataatcgattcatcgaggtgagtagtgaattgcttatt-gtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 10733371  T
Q  224 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10733372 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtg 10733471  T
Q  324 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10733472 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatctaatggtgtatttacttttgaagtt 10733571  T
Q  424 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10733572 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaattgcgcaaccgtatgggagat 10733665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 224 - 517
Target Start/End: Complemental strand, 4789802 - 4789509
Alignment:
Q  224 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  4789802 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaattaacttgaaaattatatcatggatgttcgttcatgtg 4789703  T
Q  324 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 423  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4789702 aacagttttctaatttagataggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttactttagaagtt 4789603  T
Q  424 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4789602 agtattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagat 4789509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 173 - 494
Target Start/End: Complemental strand, 24314891 - 24314572
Alignment:
Q  173 gcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagctta 272  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||||||||  ||| |||| ||| |||| ||||  | ||||||||||   |||||||||    
T  24314891 gcaagtttaaatccaagcgattcattttttgcattt-ataaggagaagttaattagtttgactcaattt-atcccactgaattttctttaatggagctta 24314794  T
Q  273 cgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggt 372  Q
     | || |   ||||||||||||||||||||| ||||||||||||||  || |||| |||||||| ||||||||||||| ||||||||||| ||  |||||    
T  24314793 tgagacttcacaatcaacttgaaaattatattatggatgttcgttctagtgaacaattttctaacttagatgggattaatgatctttcaaaaattatggt 24314694  T
Q  373 ggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctct 472  Q
    |||||  |||| | |||||| | | |||||| ||||||||||| | |||||  | ||  |||| ||||| |||||  |||||  |||||| ||||||| |    
T  24314693 ggaaataagaaaatatattgttcaaccaatgatgtatttacttataaagttgtcgttgtttttgcctgttgctacaccaactactgaaagaagtttctat 24314594  T
Q  473 gctatgaaatttgtgaagaatc 494  Q
    |||||||| | |||||||||||    
T  24314593 gctatgaattatgtgaagaatc 24314572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 420 - 517
Target Start/End: Complemental strand, 16107735 - 16107639
Alignment:
Q  420 agttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||    
T  16107735 agttagcattacttttacctttggttac-gcaactgttgaaaggagtttctctgctataaattttgtgaagaatcaaatgcgcagccgtatgggagat 16107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 153 - 472
Target Start/End: Original strand, 42435870 - 42436190
Alignment:
Q  153 gtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcaga 252  Q
    ||||| ||| ||||||  ||||||  ||||||  |||||||||| ||| | ||||| | |||||||||||| | ||||| |||||||||| || | || |    
T  42435870 gtgaaatgcatatttgcatagcaaatttaaatttaagagattcagtttctacatttaataaggagaagttgatcaatttagctcgattttttcga-cata 42435968  T
Q  253 attttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagt 352  Q
    ||||||||||||||||| || || | | | ||||||| || |||||||||||||||||||| |||| ||| || | |||| ||||||||||| |||||||    
T  42435969 attttcttctttggagcctatgg-actcgacaatcaa-ttaaaaattatatcatggatgttagttcttgtgaataattttgtaatttagatgagattagt 42436066  T
Q  353 gatctttcaagaaagatggtggaaa----ctagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctact 448  Q
    ||||||||||||||  |||| ||||     || || || ||| | |||||||| | |||| |||||||| |||||| ||| ||  || | |||| | |||    
T  42436067 gatctttcaagaaaattggtagaaattacttaaaaaacgtatagtttatccaacgatgtacttacttttaaagttatcatcacaattgcatgtgacaact 42436166  T
Q  449 gcaactgttgaaaggagtttctct 472  Q
    ||||| |||||||| |||||||||    
T  42436167 gcaaccgttgaaagaagtttctct 42436190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 198 - 517
Target Start/End: Complemental strand, 24526228 - 24525909
Alignment:
Q  198 tttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaa 297  Q
    |||||||||||||||||||||||||| | || |||| ||||||| |||| |||||||||| |||||  ||| | | || | | | |||| || |||||||    
T  24526228 tttttgcatttgacaaggagaagttgatcaaattggatcgatttcatccgtcagaattttattcttcagagatcatggaactcgacaattaaattgaaaa 24526129  T
Q  298 ttatatcatggatgttc---gttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgct 394  Q
    |||||||||| ||||||    || ||| | ||  |||| |||| | |||||||||||||||||||||| |||| ||    ||| ||||| |||| ||| |    
T  24526128 ttatatcatgaatgttcattatttatggttac--ttttataatgt-gatgggattagtgatctttcaataaagttgacaaaaagtagaaaacatgttggt 24526032  T
Q  395 tatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatc 494  Q
    ||||||||| || | |||||||||||| |||||||| | || | |||||| | ||||| || |||||| ||||| ||| |||  ||  || || | | ||    
T  24526031 tatccaatgttgcacttacttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagtttttctactagaaacgttatggatagtc 24525932  T
Q  495 aaatgcgcaaccatatgggagat 517  Q
    |||||||||||||||||| ||||    
T  24525931 aaatgcgcaaccatatggaagat 24525909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 4791867 - 4791815
Alignment:
Q  23 gtataagtggtgattcacttccagttccacaccactattgttgcaaaaacctt 75  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4791867 gtataagtagtgattcacttccagttccacaccactattgttgcaaaaacctt 4791815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 198 - 517
Target Start/End: Complemental strand, 24532899 - 24532580
Alignment:
Q  198 tttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaa 297  Q
    |||||||||||||||| ||||||||  | || |||| ||||||| |||| ||||||||||||||||  ||| |   || | | |  |||||| |||||||    
T  24532899 tttttgcatttgacaatgagaagttaatcaaattggatcgatttcatccgtcagaattttcttcttcagagatcgtggaattcgaaaatcaaattgaaaa 24532800  T
Q  298 ttatatcatggatgttcgttc---atgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgct 394  Q
    ||||||||||||||||| ||    ||| | ||  |||| |||| | ||||||||||||||||||||||||||| ||    ||| ||||| |||| ||| |    
T  24532799 ttatatcatggatgttcattatttatggttac--ttttataatgt-gatgggattagtgatctttcaagaaagttgagaaaaagtagaaaacatgttggt 24532703  T
Q  395 tatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatc 494  Q
    |||||||||  | | ||| |||||||| |||||||| | || | |||||| | ||||| || |||||| ||||||||| |||  ||  || || | | ||    
T  24532702 tatccaatgtcgcacttagttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagtttctctactagaaacgttatggatagtc 24532603  T
Q  495 aaatgcgcaaccatatgggagat 517  Q
    ||||| |||||||||||| ||||    
T  24532602 aaatgtgcaaccatatggaagat 24532580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 4791816 - 4791779
Alignment:
Q  36 ttcacttccagttccacaccactattgttgcaaaaacc 73  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4791816 ttcacttccaattccacaccactattgttgcaaaaacc 4791779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 124 - 517
Target Start/End: Complemental strand, 8354815 - 8354422
Alignment:
Q  124 gcttaataatcgattcacggaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttg 223  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8354815 gcttaataatcgattcatcgaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcctttgacaaggagaagttg 8354716  T
Q  224 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtt 323  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||     
T  8354715 gttaatttggctcgattttatccataagaattttcttctttggagcttacgggaatagacaatcaacttgaaaattatatcaaggatgttcgttcttgtg 8354616  T
Q  324 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8354615 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 8354516  T
Q  424 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8354515 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagat 8354422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 420 - 518
Target Start/End: Original strand, 5700739 - 5700836
Alignment:
Q  420 agttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagatt 518  Q
    ||||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||||| |||||||||||    
T  5700739 agttaacattacttttacctttggctac-gcaactgttgaaaggagttcctctgctataagttttgtgaagaatcaaatgcgcaaccgtatgggagatt 5700836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 430
Target Start/End: Complemental strand, 291044 - 290955
Alignment:
Q  341 gatgggattagtgatctttcaagaaagatggtggaaactaga-agacatattgcttatccaatggtgtatttacttttgaagttagcatta 430  Q
    |||||||||||||||| || || |||| ||   ||||||||| ||| ||||||||||||||||| || | |||||||||||| ||||||||    
T  291044 gatgggattagtgatcgttaaataaagttgagagaaactagataga-atattgcttatccaatgatgcacttacttttgaagctagcatta 290955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 224 - 517
Target Start/End: Complemental strand, 18548463 - 18548170
Alignment:
Q  224 gttaatttggctcgattttatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgtt 323  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  18548463 gttaatttggctcgattttatccgtcagaattttcttctttggagcttacgggaataggcaattaacttgaaaattatatcatggatgttcgttcatgtg 18548364  T
Q  324 aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagtt 423  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  18548363 aacagttttctaactaagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacgttagaagtt 18548264  T
Q  424 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18548263 agcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccgtatgggagat 18548170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 18550541 - 18550445
Alignment:
Q  23 gtataagtggtgattcacttccagttccacaccactattgttgcaaaaaccttatgttctgttgttgttgctttgttaataaacattaattccatgt 119  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||    
T  18550541 gtataagtagcgattcacttccagttccacaccactattgttgcaaaaaccttctcttctgttgttgttgctttgttaataaacattaatcccatgt 18550445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 291 - 517
Target Start/End: Original strand, 12252076 - 12252304
Alignment:
Q  291 ttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaa---actagaagaca 387  Q
    ||||||||||||||||||||||| |||| ||| || | |||||||||||||||||||||||||||||||||| |||  |||| |||   | ||||||||     
T  12252076 ttgaaaattatatcatggatgttagttcttgtgaatatttttctaatttagatgggattagtgatctttcaaaaaaattggtagaaattattagaagacg 12252175  T
Q  388 tattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtg 487  Q
    ||||| |||||| | |||||| ||||||| ||||||| ||| |   || | |||| | |||||||| |||||||| |||||||||  ||| || ||||||    
T  12252176 tattgtttatccgacggtgtacttactttcgaagttatcatcataattgcatgtgacaactgcaac-gttgaaagaagtttctctattataaactttgtg 12252274  T
Q  488 aagaatcaaatgcgcaaccatatgggagat 517  Q
    ||||||||| ||| | ||| || |||||||    
T  12252275 aagaatcaattgcacgaccgtaagggagat 12252304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 18168903 - 18169010
Alignment:
Q  143 gaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgatttt 242  Q
    ||||||||||||||||||||||||||||||| | | ||| |||||| |||||   ||||||||||||| | |||||||||  ||| ||| ||| ||||||    
T  18168903 gaggtgagtagtgaattgcttatttgtgtagaaggtttacatccaaaagatttcatttttgcatttgatagggagaagtttattagtttagcttgatttt 18169002  T
Q  243 atccatca 250  Q
    ||||||||    
T  18169003 atccatca 18169010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 496
Target Start/End: Complemental strand, 966036 - 965912
Alignment:
Q  369 tggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagttt 468  Q
    ||||||||||||||| || |||| ||||| ||||| |||||||||||  ||||||||||||  | |||| |||||| ||||||||| ||||   ||||||    
T  966036 tggtggaaactagaaaacttattacttattcaatgatgtatttacttacgaagttagcatttgtattacatgtggcaactgcaacttttga---gagttt 965940  T
Q  469 ctctgctatgaaatttgtgaagaatcaa 496  Q
    ||||  | |||| ||| |||||||||||    
T  965939 ctctattgtgaactttatgaagaatcaa 965912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 510
Target Start/End: Original strand, 11985790 - 11986015
Alignment:
Q  289 acttgaaaattatatcatggatgttcgttcatgtt----aacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaag 384  Q
    |||| |||||| ||||||||||||| |||| | ||    |||| |||||||||||||||||| | ||| |||||| |||||||   ||| |||||||||     
T  11985790 acttaaaaattctatcatggatgtttgttcctttttgcgaacaattttctaatttagatggggtaagttatcttttaagaaagtctgtgaaaactagaaa 11985889  T
Q  385 acatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaattt 484  Q
    ||| |||  |||||||||  | || ||| |||| ||| || ||||| | || | | |||| ||| ||| | |||| |||||||||||||| || || |||    
T  11985890 acaaatttgttatccaatattatacttaattttaaagctaacattattattgcatatggcgactccaattcttgacaggagtttctctgcaataaatttt 11985989  T
Q  485 gtgaagaatcaaatgcgcaaccatat 510  Q
    || ||||||||||||| || ||||||    
T  11985990 gtaaagaatcaaatgcacagccatat 11986015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 2980653 - 2980709
Alignment:
Q  420 agttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctat 477  Q
    ||||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  2980653 agttatcattacttttacctctagctac-gcaactgttgaaaggagtttctctgctat 2980709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 18169077 - 18169173
Alignment:
Q  330 tttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcatt 429  Q
    |||||||||||||  |||   ||||||||||||  ||| ||||||||||||||| || |||| || ||||||   ||||||||||||| |||||||||||    
T  18169077 tttctaatttagaaaggaccggtgatctttcaaagaagttggtggaaactagaaaacttattactaatccaa---tgtatttacttttaaagttagcatt 18169173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 148 - 507
Target Start/End: Original strand, 12818005 - 12818369
Alignment:
Q  148 gagtagtgaattgcttatttgtgtagcaagcttaaatccaagagatt---cattttttgcatttgacaaggagaagttggttaatttggctcgattttat 244  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||   ||||||||||||||  ||| || |||||| |||||||||||| |||||||    
T  12818005 gagtagtgaattgattatttgtgtagcaagcttaaatccaatagattgatcattttttgcattttgcaaagaaaagttgattaatttggctccattttat 12818104  T
Q  245 ccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttcta---atttag 341  Q
    || || |||||||||||  ||||||||| |||  | | |||||||||||| ||||||||||| ||||||||||   || || | |||||||   ||||||    
T  12818105 ccctctgaattttcttcaatggagcttatggggcttgacaatcaacttgagaattatatcatagatgttcgttttagtgaataattttctaattatttag 12818204  T
Q  342 atgggattagtgatctttcaagaaagatggtggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgt 441  Q
    ||| |||||||||||||||| ||| ||| |||||||| |||| | |||||| ||||||||||||| |||||||| | |||||| |||| |||||  | ||    
T  12818205 atgagattagtgatctttcacgaatgatcgtggaaacaagaaaatatattgtttatccaatggtgcatttacttctaaagttatcattgcttttgtcggt 12818304  T
Q  442 ggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaacca 507  Q
    ||||| |||||||||| |||   |||||| |||  |||||| |||||||||| || ||||||||||    
T  12818305 ggctaatgcaactgtt-aaaaatgtttctttgcagtgaaatatgtgaagaatgaattgcgcaacca 12818369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 517
Target Start/End: Original strand, 6015340 - 6015568
Alignment:
Q  291 ttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggtggaa---actagaagaca 387  Q
    ||||||||||||||||||||||| |||| ||| || | |||||||||||||||||||||| ||||||||||| |||  |||| |||   | ||||| ||     
T  6015340 ttgaaaattatatcatggatgttagttcttgtgaatatttttctaatttagatgggattaatgatctttcaaaaaaattggtagaaattattagaaaacg 6015439  T
Q  388 tattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtg 487  Q
    ||||| |||||| | |||||| |||||||  |||||| ||| |   || | |||| | |||||||| |||||||| | |||||||  ||| || ||||||    
T  6015440 tattgtttatccgacggtgtacttactttcaaagttatcatcataattgcatgtgacaactgcaac-gttgaaagaaatttctctagtataaactttgtg 6015538  T
Q  488 aagaatcaaatgcgcaaccatatgggagat 517  Q
    ||||||||| ||| | ||| || |||||||    
T  6015539 aagaatcaattgcacgaccgtaagggagat 6015568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 395 - 517
Target Start/End: Complemental strand, 26588523 - 26588401
Alignment:
Q  395 tatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26588523 tatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatc 26588424  T
Q  495 aaatgcgcaaccatatgggagat 517  Q
    |||||||||| | ||||||||||    
T  26588423 aaatgcgcaaacgtatgggagat 26588401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 26589263 - 26589166
Alignment:
Q  23 gtataagtggtgattcacttccagttccacaccactattgttgcaaaaaccttatg-ttctgttgttgttgctttgttaataaacattaattccatgt 119  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  26589263 gtataagtagtgattcacttccagttccacactactattgttgcaaaaaccttatgtttctgttgttgttgctttgttaataaacaataattccatgt 26589166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 472
Target Start/End: Original strand, 11405288 - 11405618
Alignment:
Q  142 ggaggtgagtagtgaattgcttatttgtgtagcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattt 241  Q
    |||||||| | ||||| ||| ||||||  ||||||| ||||||  |||||||||| ||| | ||||| | |||||||||||| | ||||| ||| |||||    
T  11405288 ggaggtgatttgtgaaatgcatatttgcatagcaagtttaaatttaagagattcagtttctacatttaataaggagaagttgatcaatttagcttgattt 11405387  T
Q  242 tatccatcagaattttcttctttggagcttacgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttag 341  Q
    | || | || |||||||||||||||||| ||  ||| | | || |||| || |||||||||||||||||||| |||  ||| || | |||| ||||||||    
T  11405388 tttcga-cataattttcttctttggagccta-tggactcgacagtcaa-ttaaaaattatatcatggatgttagttattgtgaataattttttaatttag 11405484  T
Q  342 atgggattagtgatctttcaagaaagatggtggaa---actagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacc 438  Q
    ||| ||||| | |||||||||||||  |||| |||   |||| ||  | ||| | |||||||| | |||| ||||||||||||||| ||| ||  || |     
T  11405485 atgagattaattatctttcaagaaaattggtagaaattactaaaaaccgtatagtttatccaacgatgtacttacttttgaagttatcatcacaattgca 11405584  T
Q  439 tgtggctactgcaactgttgaaaggagtttctct 472  Q
    |||| | |||||||| |||| ||| |||||||||    
T  11405585 tgtgacaactgcaaccgttgtaagaagtttctct 11405618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 173 - 506
Target Start/End: Complemental strand, 19144241 - 19143909
Alignment:
Q  173 gcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagctta 272  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||||||||  ||| |||| |||||||||||||  | |||||||||||  |||||||||    
T  19144241 gcaagtttaaatccaagcgattcattttttgcattt-ataaggagaagttaattagtttgactcgattttatcccactgaattttcttcaatggagctta 19144143  T
Q  273 cgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggt 372  Q
     | || |   |||| || ||||||||||||| ||||||||||||||  || |||| |||||||| ||||||||||||| ||||||||||| ||  |||||    
T  19144142 tgagacttcacaattaatttgaaaattatattatggatgttcgttctagtgaacaattttctaacttagatgggattaatgatctttcaaaaattatggt 19144043  T
Q  373 ggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctct 472  Q
    |||||  |||| | |||||| | |||||||| ||||||||||| | |||||  | ||  ||||  | || ||| |  |||||  |||||| ||||||| |    
T  19144042 ggaaataagaaaatatattgttcatccaatgatgtatttacttataaagttgtcgttgtttttgtcggttgctgcaccaactactgaaagaagtttctat 19143943  T
Q  473 gctatgaaatttgtgaagaatcaaatgcgcaacc 506  Q
    |||||||| | ||||||||||| ||||| |||||    
T  19143942 gctatgaattatgtgaagaatctaatgcacaacc 19143909  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 173 - 494
Target Start/End: Original strand, 19101564 - 19101884
Alignment:
Q  173 gcaagcttaaatccaagagattcattttttgcatttgacaaggagaagttggttaatttggctcgattttatccatcagaattttcttctttggagctta 272  Q
    ||||| ||| ||||||| |||||||||||||||||| | |||||||||||  ||| |||| |||||||||||||  | |||||||||||  |||||||||    
T  19101564 gcaagtttatatccaagcgattcattttttgcattt-ataaggagaagttaattagtttgactcgattttatcccactgaattttcttcaatggagctta 19101662  T
Q  273 cgggaataggcaatcaacttgaaaattatatcatggatgttcgttcatgttaacagttttctaatttagatgggattagtgatctttcaagaaagatggt 372  Q
     | || |   |||| || ||||||||||||| ||||||||||||||  || |||| ||||||||  ||||||| |||| ||||||||||| ||  |||||    
T  19101663 tgagacttcacaataaatttgaaaattatattatggatgttcgttctagtgaacaattttctaacgtagatggaattaatgatctttcaaaaattatggt 19101762  T
Q  373 ggaaactagaagacatattgcttatccaatggtgtatttacttttgaagttagcattacttttacctgtggctactgcaactgttgaaaggagtttctct 472  Q
    |||||  |||| | |||||| | |||||||| ||||||||||| | |||||  | ||  |||| || || |||||  |||||  |||||| ||||||| |    
T  19101763 ggaaataagaaaatatattgttcatccaatgatgtatttacttataaagttgtcgttgtttttgcccgttgctacaccaactaatgaaagaagtttctat 19101862  T
Q  473 gctatgaaatttgtgaagaatc 494  Q
    |||||||| | |||||||||||    
T  19101863 gctatgaattatgtgaagaatc 19101884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 32934511 - 32934415
Alignment:
Q  23 gtataagtggtgattcacttccagttccacaccactattgttgcaaaaaccttatgttctgttgttgttgctttgttaataaacattaattccatgt 119  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||    
T  32934511 gtataagtagcgattcacttccagttccacaccactattgttgcaaaaactttctgttctgttgttgttgctttgttaataaacattaatcccatgt 32934415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 331 - 481
Target Start/End: Complemental strand, 5090963 - 5090812
Alignment:
Q  331 ttctaatttagatgggattagtgatctttcaagaaagatggtggaaactagaaga-catattgcttatccaatggtgtatttacttttgaagttagcatt 429  Q
    ||||||||| | |||||||||||||| |||||||| | |||||||||||| || | ||||||| |||| |||||||||||||||||||||| ||||||||    
T  5090963 ttctaatttgggtgggattagtgatcattcaagaatgttggtggaaactaaaaaaacatattgtttatgcaatggtgtatttacttttgaaattagcatt 5090864  T
Q  430 acttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaa 481  Q
    |||||| |  ||||  | ||||||||||||||||||||||||| ||||||||    
T  5090863 acttttgcacgtggaaaatgcaactgttgaaaggagtttctcttctatgaaa 5090812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 7733495 - 7733411
Alignment:
Q  35 attcacttccagttccacaccactattgttgcaaaaaccttatgttctgttgttgttgctttgttaataaacattaattccatgt 119  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  7733495 attcacttccagttccacagcactattgttgcaaaaacattatgttatgttgttgttgctatgttaataaacattaatcccatgt 7733411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 420 - 517
Target Start/End: Complemental strand, 24586071 - 24585975
Alignment:
Q  420 agttagcattacttttacctgtggctactgcaactgttgaaaggagtttctctgctatgaaatttgtgaagaatcaaatgcgcaaccatatgggagat 517  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||  |||||| |||| |||||    
T  24586071 agttagcattacttttacctctggcta-tgcaactgttgaaaggagtttctctgctatatattttgtgaagaatcaaattggcaaccgtatgagagat 24585975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 17354733 - 17354778
Alignment:
Q  215 gagaagttggttaatttggctcgattttatccatcagaattttctt 260  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||||    
T  17354733 gagaagttgatcaatttggctccattttatccatcacaattttctt 17354778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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