View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_17 (Length: 430)
Name: NF20821_low_17
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 3531976 - 3532371
Alignment:
| Q |
18 |
acatacaagataagaatctttgattcttgttatccatatcagtcatgtctaaaccaaattcactcataaccaatggattagggttagaaccactcattag |
117 |
Q |
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| T |
3531976 |
acatacatgacaagaatctttgattcttgtcatccatatcagtcatgtctaaaccaaattcactcataaccaatggattagggttagaaccactcattag |
3532075 |
T |
|
| Q |
118 |
aaatccagccttatcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcatag |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532076 |
aaatccagccctatcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcatag |
3532175 |
T |
|
| Q |
218 |
gaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532176 |
gaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaata |
3532275 |
T |
|
| Q |
318 |
ctagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
3532276 |
ctagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaattgtctatgttttgacctggacctcttagttcat |
3532371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 31 - 413
Target Start/End: Original strand, 3527562 - 3527944
Alignment:
| Q |
31 |
gaatctttgattcttgttatccatatcagtcatgtctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagcctta |
130 |
Q |
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| T |
3527562 |
gaatgtttgattcttgtcatcaatagcagtcaagtcagcaccaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgcctta |
3527661 |
T |
|
| Q |
131 |
tcattcaatccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgt |
230 |
Q |
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|||||||| |||||||||||| |||||||||| ||||||||||| |||||| || | |||||||||||||||||||||||||||||||| |
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| T |
3527662 |
tcattcaaattattcattacattagcacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgt |
3527761 |
T |
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| Q |
231 |
acaccaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttgg |
330 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
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| T |
3527762 |
acaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattggg |
3527861 |
T |
|
| Q |
331 |
attttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
413 |
Q |
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| T |
3527862 |
attttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 61 - 413
Target Start/End: Original strand, 3549300 - 3549656
Alignment:
| Q |
61 |
catgtctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattg----gc |
156 |
Q |
| |
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|||||| | |||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| || |
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| T |
3549300 |
catgtccataccaaattcagtcataaccaatggattagggttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacattaattagc |
3549399 |
T |
|
| Q |
157 |
acatttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatg |
256 |
Q |
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|||||||| |||| ||||| | |||||||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| | | |
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| T |
3549400 |
acattttttattcactggttgctcaatccaatcttttggtgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaaca |
3549499 |
T |
|
| Q |
257 |
tttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctc |
356 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
3549500 |
tttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactc |
3549599 |
T |
|
| Q |
357 |
cttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
413 |
Q |
| |
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||||||||||||| || | |||| || ||||||||| |||||||| |||||||| |
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| T |
3549600 |
cttggctcatgtatttgtaccaattgtcattgttttgacctggacctcgtagttcat |
3549656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 70 - 413
Target Start/End: Original strand, 3554900 - 3555243
Alignment:
| Q |
70 |
accaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccttatcattcaatccattcattacattggcacatttttggttc |
169 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
3554900 |
accaaattcactcataaccaatggtttagggttagaaccactcatgagaaaccctgccttatcattcaaattattcattacattagcacattttttgttc |
3554999 |
T |
|
| Q |
170 |
aatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaatttgtctcctatgcttatgtttagaggatttg |
269 |
Q |
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||||||| | |||||| || || |||| ||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||| |||| |
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| T |
3555000 |
aatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttg |
3555099 |
T |
|
| Q |
270 |
ttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgta |
369 |
Q |
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| |||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||| |
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| T |
3555100 |
tcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgta |
3555199 |
T |
|
| Q |
370 |
cttctgccaactgcttatgttttgacttggacctcttagttcat |
413 |
Q |
| |
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||| |||||| || || |||||| |||||||||||||||||| |
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| T |
3555200 |
cttgtgccaattgttttcgttttgttttggacctcttagttcat |
3555243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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