View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_21 (Length: 405)
Name: NF20821_low_21
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 31138323 - 31138716
Alignment:
| Q |
1 |
ttcctcatatgttacatgtgcctgtgattctctattgccaattccaaaacataccacatgcaatctcttgtatatatttgcatatatcaatatgtgacta |
100 |
Q |
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| T |
31138323 |
ttcctcatatgttacatgtgcctgtgattctctattgcctattccaaaacataccacatgcaatctcttgtatatatttgcata-----atatgtgacta |
31138417 |
T |
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| Q |
101 |
g------gagcaatatcagccatattttggtgataagcaacacaatgttgttaaatgcatagtttggacatgaactcggataaattcaaactagagctag |
194 |
Q |
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| T |
31138418 |
ggtctaggagcaatatcagccatattttgttgataagtaacacaatgttgttaaatgcatagtttggacatgaactcggataaattcacactagagctag |
31138517 |
T |
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| Q |
195 |
ccttcaaagactactagagtgtcatatgaatatggtatcctaatatcctatgcatgagaatagaacaatagtggcgaataaacaataaaagggaaaacaa |
294 |
Q |
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| T |
31138518 |
ccttcaaagactactagagtgtcatatgaatatgatatcctaatatcctatgcatgagaatagaacaatagtggcgaataaacaataaaagggaaaacaa |
31138617 |
T |
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| Q |
295 |
tcagaatagtgcaaaaactatctgattgacaacaagctctcactggggtaggaaacaatcatgatcaggatagatatcgaagggaaagagatggtgatg |
393 |
Q |
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| T |
31138618 |
tcagaatagtgcaaaaactatctgattgacaacaagctctcactggggttggaaacaatcatgatcaggatagatatcgaagggaaagagatggtgatg |
31138716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 31102602 - 31102439
Alignment:
| Q |
1 |
ttcctcatatgttacatgtgcctgtgattctctattgccaattccaaaacataccacatgcaatctcttgtatatatttgcatatatcaatatgtgacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31102602 |
ttcctcatatgttacatgtgcctgtgattctctattgcctattccaaaacataccacatgcaatctcttgtatatatttgcat-----aatatgtgacta |
31102508 |
T |
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| Q |
101 |
ggagcaatatcagccatattttggtgataagcaacacaatgttgttaaatgcatagtttggacatgaac |
169 |
Q |
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| T |
31102507 |
ggagcaatatcagccatattttgttgataagtaacacaatgttgttaaatgcatagtttcgacatgaac |
31102439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 242 - 390
Target Start/End: Complemental strand, 31102423 - 31102274
Alignment:
| Q |
242 |
ctatgcatgagaatagaacaatagtggcgaataaacaataaaagggaaaacaatcagaatagtgcaaaaactatctgattgacaacaagctctcact-gg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
31102423 |
ctatgcatgagaatagaacaatagtggcgaataaacaataaaagggaaaacaatcagaatagtgcaaaaactattcgattgacaacaagctctcactggg |
31102324 |
T |
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| Q |
341 |
ggtaggaaacaatcatgatcaggatagatatcgaagggaaagagatggtg |
390 |
Q |
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| T |
31102323 |
ggttggaaacaatcatgaccaggatagatatctaaggggaagagatggtg |
31102274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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