View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_23 (Length: 391)
Name: NF20821_low_23
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 42467276 - 42466901
Alignment:
| Q |
3 |
aggaggagcacagatggcaacatacttcaatgaaaattgacatgtgtggaataggttattccagcaccccagttggaaggagcaacattccaagctatta |
102 |
Q |
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| T |
42467276 |
aggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttagtccagcaccccagttggaaggagcaacattccaagctatta |
42467177 |
T |
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| Q |
103 |
tagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggtaagaagcaccccaattgtggctcatgct |
202 |
Q |
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| T |
42467176 |
tagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggtaagaagcaccccaattgtggctcatgct |
42467077 |
T |
|
| Q |
203 |
aatccatcctgttctacttcctttaacccacatgtttgctatatcacctccacctcccacattcatcacgtacaccaataaccaatatccatttccttgg |
302 |
Q |
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| T |
42467076 |
aatccatcctgttctacttcctttaacccacatgtttgctatatcacctccacctcccacattcatcacgtacaccaataaccaatatccatttccttgg |
42466977 |
T |
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| Q |
303 |
aaagagaatcgaaatccttcacttctcacgcaaggtactctaagaaattcaattttttattaacaaatcacattgt |
378 |
Q |
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| T |
42466976 |
aaagagaatcgaaatccttcacttctcacgcaaggtactctaagaaattcaaatttttatcaacaaatcacattgt |
42466901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 315
Target Start/End: Original strand, 3183511 - 3183751
Alignment:
| Q |
75 |
ttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggt |
174 |
Q |
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|||||||||||||||||||| || || ||||| || || || ||||| ||||||| | |||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
3183511 |
ttggaaggagcaacattccatgcaataatagtctccttagtggtgtatgaagtaagcctgaaagaaagagcttgaccacctagtgttgcaaatgcttggt |
3183610 |
T |
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| Q |
175 |
aagaagcaccccaattgtggctcatgctaatccatcctgttctacttcctttaacccacatgtttgctatatcacctccacctcccacattcatcacgta |
274 |
Q |
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| T |
3183611 |
aggaagcaccccagttatggctcatcttaatccatcctgttctgcttcctttcaccatcatgctcgacatatctcctccacctccgacgttcatcacata |
3183710 |
T |
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| Q |
275 |
caccaataaccaatatccatttccttggaaagagaatcgaa |
315 |
Q |
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| T |
3183711 |
caccaatagccagtacccgtttccttggaaagaaaatcgaa |
3183751 |
T |
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