View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_25 (Length: 366)
Name: NF20821_low_25
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 54 - 359
Target Start/End: Original strand, 4325072 - 4325378
Alignment:
| Q |
54 |
aggaatcaaatgctccacttaattgcctactaaattaaatgggacagtgatttttcacnnnnnnncctttcaccagaccattaaa-ctccaaaaggttca |
152 |
Q |
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| T |
4325072 |
aggaatcaaatgctccacttaattgcctactaaattaaatgggacagtaatttttcactttttttcctttcaccagaccattaaaactccaaaaggttca |
4325171 |
T |
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| Q |
153 |
ccaccacttcactattgccaaagacagtggacaagtgaaaaacaaatgattataagttttctcttcataaaaacacaatacacaacattgttgaagaggg |
252 |
Q |
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| T |
4325172 |
ccaccacttcactattgccaaagacagtggacaagtgaaaaacaaatgattataagttttctctttataaaaacacaatacacaacattgttgaagaggg |
4325271 |
T |
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| Q |
253 |
tctcttacacataattgccacaattgcatccgagtatgaaccctcccataaaattgggcatgaggcatgtattcacttttgtttctatccaaaaatattc |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4325272 |
tctcttacacataattgccacaattgcatccgagtatgaaccctcccataaaactgggcatgaggcatgtattcacctttgtttctatccaaaaatattc |
4325371 |
T |
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| Q |
353 |
acctttg |
359 |
Q |
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||||||| |
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| T |
4325372 |
acctttg |
4325378 |
T |
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