View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_3 (Length: 819)
Name: NF20821_low_3
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 146 - 709
Target Start/End: Complemental strand, 33353440 - 33352884
Alignment:
| Q |
146 |
tatgtatttttgccctaaatcgtgtttaaatgtttgtgatcatacaagacttccttctcaatttttaaataatgcaggtcagcgagatcgctagcgggga |
245 |
Q |
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| T |
33353440 |
tatgtatttttgccctaaatcgtgtttaaatgtttgtgatcatacaagacttccttctcaatttttaaataatgcaggtcagcaagatcgttagcgggga |
33353341 |
T |
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| Q |
246 |
gtgcaactccaccctcgtttacccatctaagagctgctaaaagtggtccttcagctttggaattcatccatgattcttctgatgatgatgaagcatctca |
345 |
Q |
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| T |
33353340 |
gtgcaactccaccctcgtttacccatctaagagctgctaaaagtggtccttcagccttggaattcatccacgattcttctgatgatgatgaagcatctca |
33353241 |
T |
|
| Q |
346 |
agttacgtctaacatctctacaaccaagccttggtccataccacgttctgtagatgtgagtctctcacttgtttacctcaaacatgctacttgtgttgtg |
445 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33353240 |
agttacgtccaatatctctacaaccaagccttggtccataccacgttctgtcgatgtgagtctctcacttgtttacctcaaacatgctacttgtgttgtg |
33353141 |
T |
|
| Q |
446 |
aggatcatataatgacaaataacatcctgactactaagtcatgggcagtagttttaagaaattaaatcaaatattttcttacaaagtgtatataaaaata |
545 |
Q |
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| T |
33353140 |
aggatcatataatgacaaataacatcctgactactaagt-atgggcagtagttttaagaaattaaatcaaatattttcttacaaagtgtatataaaaata |
33353042 |
T |
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| Q |
546 |
tcaaatacaaattaaaacctaaattgagacttctaattgaaagtgtgtggtacctaactacacacatatctacctttaattatttcattttcttaaatta |
645 |
Q |
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| T |
33353041 |
tcaaatacaagttaaaacctaaactgagacttctgattgaaagtgtgtggta------taaacacacatctacctttaattatttcattttcctaaatta |
33352948 |
T |
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| Q |
646 |
ttttcaaggttgatgtgtctctgtcgtgttaggcctccatatctacgtgaatgctagttcgtag |
709 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33352947 |
tttttaaggttgatgtgtccctgtcgtgttaggcctccatatctacgtgaatgctaattcgtag |
33352884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33353585 - 33353491
Alignment:
| Q |
1 |
cactcaatgtgttactctcaattatgaaaaatatttcattagtcacaaatatttagacattttatttggacacattcacatacttgagtaaagtt |
95 |
Q |
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| T |
33353585 |
cactcaatgtgttactctcaattatgaaaaatatttcattagtcacaaatatttagacattttatttcgacacattcacatacttgagtaaagtt |
33353491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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