View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20821_low_30 (Length: 344)
Name: NF20821_low_30
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20821_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 14178225 - 14177906
Alignment:
| Q |
7 |
tccaagaaaatatctcatatttcccaaatctgtcatggaaaactttccctttatagaatgcttgaaagtttcaaacatagtaacatcattttcagtatat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14178225 |
tccaagaaaatatctcatatttcccaaatctgtcatagcaaactttccctttatagaatgcttgaaagtttcaaacacagtaacatcattttcagtatat |
14178126 |
T |
|
| Q |
107 |
atgagatcatccatataccagctaacaattaacagtttccctccagattcattcttaacaaataaggtgtcttcatgagagcatttcataaatttttctt |
206 |
Q |
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| T |
14178125 |
atgagatcatccatataccggctaacaattaacagtttccctccagattcattcttaacaaataaggtgtgttcatgagagcatttcataaatttttctt |
14178026 |
T |
|
| Q |
207 |
gaataaagtaagattatgtcttagtgtacgtctcataccatacatagctttctttagtttgcataccacgcttgtatcatcattctgataacctaaagtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
14178025 |
gaataaagtaagattatgtcttagtgtacgtctcataccatacatagctttctttagtttgcatacctcgcttgtatcatcattctgataacctaaaggt |
14177926 |
T |
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| Q |
307 |
agctccacatacacatcttc |
326 |
Q |
| |
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||||||||||||| |||||| |
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| T |
14177925 |
agctccacatacatatcttc |
14177906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 20531305 - 20531262
Alignment:
| Q |
178 |
ttcatgagagcatttcataaatttttcttgaataaagtaagatt |
221 |
Q |
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| T |
20531305 |
ttcatgagagcatttcataaaattttcttgagcaaagtaagatt |
20531262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 3013022 - 3013167
Alignment:
| Q |
76 |
ttcaaacatagtaacatcattttcagtatatatgagatcatccatataccagctaacaattaacagtttccctccagattcattcttaacaaataaggtg |
175 |
Q |
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||||||||||| |||||||| | | || ||||| |||||||||| | | |||||| |||| || ||||||| |||| | |||||| ||||| ||||| |
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| T |
3013022 |
ttcaaacatagcaacatcatctcctgtgtatataagatcatccacaatcaggctaactattagcattttcccttcagagttattcttcacaaacaaggta |
3013121 |
T |
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| Q |
176 |
tcttcatgagagcatttcataaatttttcttgaataaagtaagatt |
221 |
Q |
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| T |
3013122 |
tgttcatgagagcatttcatgaaattttcttgagcaaagtaagatt |
3013167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 7849662 - 7849718
Alignment:
| Q |
8 |
ccaagaaaatatctcatatttcccaaatctgtcatggaaaactttccctttatagaa |
64 |
Q |
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||||||||||| ||||| ||||||||||| ||||||| ||| ||| |||| |||||| |
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| T |
7849662 |
ccaagaaaatacctcatctttcccaaatcagtcatggcaaagttttccttcatagaa |
7849718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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