View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20821_low_33 (Length: 333)

Name: NF20821_low_33
Description: NF20821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20821_low_33
NF20821_low_33
[»] chr8 (6 HSPs)
chr8 (21-267)||(5879332-5879578)
chr8 (265-328)||(5879118-5879181)
chr8 (236-293)||(2598298-2598356)
chr8 (270-299)||(3117178-3117207)
chr8 (268-304)||(8740907-8740943)
chr8 (236-319)||(27870759-27870843)
[»] chr5 (4 HSPs)
chr5 (269-321)||(5731705-5731757)
chr5 (271-321)||(39213276-39213326)
chr5 (268-316)||(33537495-33537543)
chr5 (251-304)||(28225146-28225199)
[»] chr4 (3 HSPs)
chr4 (226-319)||(17121129-17121223)
chr4 (243-321)||(11025033-11025112)
chr4 (267-319)||(23915571-23915623)
[»] chr7 (2 HSPs)
chr7 (268-319)||(7929989-7930040)
chr7 (271-321)||(29121442-29121492)
[»] chr3 (1 HSPs)
chr3 (268-319)||(54225971-54226022)
[»] chr2 (4 HSPs)
chr2 (256-319)||(23492789-23492850)
chr2 (267-321)||(38449250-38449304)
chr2 (268-317)||(15873573-15873622)
chr2 (225-293)||(42363890-42363958)
[»] chr1 (1 HSPs)
chr1 (267-300)||(44122156-44122189)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 5879578 - 5879332
Alignment:
Q  21 tctgtaaggtttggtattcgatttttacgttgattgaaacgggtgtaattttacctagaaattgtagtca---ttctagaccatttatcatcgtcttctt 117  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  5879578 tctgtaaggtttggtattcgatttttacgttgat-gaaacaggtgtaattttacctagaaattgtagtcactcttctagaccatttatcatcgtcttctt 5879480  T
Q  118 ggtgtaaaaaacatcaaaaagacctaactcttatttagcatacaataattccaaagatttgagagactcgaaatggggtgatctaactaagcaaaaaggg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5879479 ggtgtaaaaaacatcaaaaagacctaactcttatttagcatacaataatg--aaagatttgagagactcgaaatggggtgatctaactaagcaaaaaggg 5879382  T
Q  218 gtgccttatactcactttgtcttagaataggtgtcattttttctaattct 267  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5879381 gtgccttatactccctttgtcttagaataggtgtcattttttctaattct 5879332  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 5879181 - 5879118
Alignment:
Q  265 tcttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattattttcttcgac 328  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||    
T  5879181 tcttttgtctcaaattatttgtcccttttataataccaatataatatttattacttttttcgac 5879118  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 2598298 - 2598356
Alignment:
Q  236 gtcttagaataggtgtcattttttctaattctt-ttgtctcaaattatttgtccctttt 293  Q
    |||||| ||||||||| || |||||||||| || |||||||||||||||||||| ||||    
T  2598298 gtcttacaataggtgttatcttttctaatttttgttgtctcaaattatttgtccttttt 2598356  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 3117207 - 3117178
Alignment:
Q  270 tgtctcaaattatttgtcccttttacaata 299  Q
    ||||||||||||||||||||||||||||||    
T  3117207 tgtctcaaattatttgtcccttttacaata 3117178  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 8740907 - 8740943
Alignment:
Q  268 tttgtctcaaattatttgtcccttttacaataccaat 304  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  8740907 tttgtctaaaattatttgtcccttttacaatatcaat 8740943  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 27870759 - 27870843
Alignment:
Q  236 gtcttagaataggtgtcattttttctaattct-tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 319  Q
    |||||| | |||||||| | |||||||||| | |||||||||||| ||||||| |||||| |||| ||||  ||||||| |||||    
T  27870759 gtcttaaattaggtgtcctcttttctaattttctttgtctcaaatgatttgtctcttttataatatcaatacaatattttttatt 27870843  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 5731705 - 5731757
Alignment:
Q  269 ttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 321  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  5731705 ttgtctcaaattatttgtcccttttacaatatcaatacaatatttattatttt 5731757  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 39213276 - 39213326
Alignment:
Q  271 gtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 321  Q
    |||||||||||||||||||||||| |||||||||  || ||||||||||||    
T  39213276 gtctcaaattatttgtcccttttataataccaatacaacatttattatttt 39213326  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 33537495 - 33537543
Alignment:
Q  268 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttatt 316  Q
    |||||||||||||||||||| |||||| ||||||||| ||| |||||||    
T  33537495 tttgtctcaaattatttgtctcttttataataccaatataacatttatt 33537543  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 28225199 - 28225146
Alignment:
Q  251 tcattttttctaattcttttgtctcaaattatttgtcccttttacaataccaat 304  Q
    |||| |||| |||||  |||||||||||||||||||| ||||||||||| ||||    
T  28225199 tcatcttttataatttatttgtctcaaattatttgtctcttttacaataacaat 28225146  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 17121129 - 17121223
Alignment:
Q  226 tactcactttgtcttagaataggtgtcattttttctaattct-tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 319  Q
    ||||| |||||||| | ||| |||||| ||||| ||| || | |||||| || |||||||||||||||||||||||||||| || ||||||||||    
T  17121129 tactccctttgtctcaaaattggtgtcttttttactatttttctttgtcacatattatttgtcccttttacaataccaatgcaacatttattatt 17121223  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 11025112 - 11025033
Alignment:
Q  243 aataggtgtcattttttctaattct-tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 321  Q
    |||| ||||||| |||| ||||| | ||||||||||||||||||| |||| ||||||| |||| ||| ||||||||||||    
T  11025112 aatatgtgtcatcttttataattttctttgtctcaaattatttgttccttctacaatatcaatataacatttattatttt 11025033  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 23915623 - 23915571
Alignment:
Q  267 ttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 319  Q
    |||||||| ||| |||||||||||||||||||||||||  || ||||||||||    
T  23915623 ttttgtcttaaaatatttgtcccttttacaataccaatacaacatttattatt 23915571  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 7929989 - 7930040
Alignment:
Q  268 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 319  Q
    |||||||||| |||||||||||||||||||||| |||  || ||||||||||    
T  7929989 tttgtctcaatttatttgtcccttttacaatactaatacaacatttattatt 7930040  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 29121442 - 29121492
Alignment:
Q  271 gtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 321  Q
    |||||||||||||||||||||||||||||| |||  || ||||| ||||||    
T  29121442 gtctcaaattatttgtcccttttacaatactaatacaacatttactatttt 29121492  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 54226022 - 54225971
Alignment:
Q  268 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 319  Q
    |||||||| ||||| ||||||||||||||||||||||  || ||||||||||    
T  54226022 tttgtctcgaattacttgtcccttttacaataccaatacaacatttattatt 54225971  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 23492789 - 23492850
Alignment:
Q  256 ttttctaattcttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatt 319  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||  || ||||||||||    
T  23492789 ttttctaatt-ttttgtctcaaattatttgt-ccttttacaatacaaatacaacatttattatt 23492850  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 38449304 - 38449250
Alignment:
Q  267 ttttgtctcaaattatttgtcccttttacaataccaatgtaatatttattatttt 321  Q
    |||||| ||||||||||||||  |||||||||||||||  || ||||||||||||    
T  38449304 ttttgtttcaaattatttgtctattttacaataccaatacaacatttattatttt 38449250  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 15873573 - 15873622
Alignment:
Q  268 tttgtctcaaattatttgtcccttttacaataccaatgtaatatttatta 317  Q
    ||||||||||||||||||||||||||| |||| ||||  || ||||||||    
T  15873573 tttgtctcaaattatttgtcccttttataatatcaatacaacatttatta 15873622  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 293
Target Start/End: Complemental strand, 42363958 - 42363890
Alignment:
Q  225 atactcactttgtcttagaataggtgtcattttttctaattcttttgtctcaaattatttgtccctttt 293  Q
    |||||| ||| |||||| |||||||||||| ||  ||| ||  ||||||||||||||||||||| ||||    
T  42363958 atactcccttcgtcttataataggtgtcatcttaactactttctttgtctcaaattatttgtccatttt 42363890  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 44122156 - 44122189
Alignment:
Q  267 ttttgtctcaaattatttgtcccttttacaatac 300  Q
    |||||||||||||||||||||||||||| |||||    
T  44122156 ttttgtctcaaattatttgtcccttttataatac 44122189  T

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